Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU04_RS05260 Genome accession   NZ_CP155965
Coordinates   1261174..1262568 (-) Length   464 a.a.
NCBI ID   WP_228957555.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain BR11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256174..1267568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU04_RS05245 (ABFU04_05240) pilC 1256853..1258106 (-) 1254 WP_225042505.1 type II secretion system F family protein Machinery gene
  ABFU04_RS05250 (ABFU04_05245) pilA2 1258418..1258867 (+) 450 WP_225042506.1 pilin Machinery gene
  ABFU04_RS05255 (ABFU04_05250) pilB 1259024..1260757 (+) 1734 WP_228957556.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU04_RS05260 (ABFU04_05255) pilR 1261174..1262568 (-) 1395 WP_228957555.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU04_RS05265 (ABFU04_05260) - 1262777..1264387 (-) 1611 WP_228957554.1 PAS domain-containing sensor histidine kinase -
  ABFU04_RS05270 (ABFU04_05265) sucC 1264621..1265790 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU04_RS05275 (ABFU04_05270) sucD 1265815..1266690 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU04_RS05280 (ABFU04_05275) - 1266861..1267355 (-) 495 WP_407290133.1 substrate binding domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50306.69 Da        Isoelectric Point: 6.5131

>NTDB_id=1000390 ABFU04_RS05260 WP_228957555.1 1261174..1262568(-) (pilR) [Xanthomonas campestris pv. raphani strain BR11]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARNIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1000390 ABFU04_RS05260 WP_228957555.1 1261174..1262568(-) (pilR) [Xanthomonas campestris pv. raphani strain BR11]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTAACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCAACATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGTCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTTACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCCTACATCGAACAACTTGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAAACCGCCGCCCAGCTAGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment