Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ABFU14_RS18045 Genome accession   NZ_CP155961
Coordinates   4176160..4177293 (+) Length   377 a.a.
NCBI ID   WP_323541904.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain NBC271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4171160..4182293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU14_RS18020 (ABFU14_18005) - 4171336..4172535 (-) 1200 WP_407471534.1 cystathionine gamma-synthase -
  ABFU14_RS18025 (ABFU14_18010) - 4172629..4173999 (-) 1371 WP_407471535.1 pyridoxal-phosphate dependent enzyme -
  ABFU14_RS18030 (ABFU14_18015) - 4174231..4174449 (-) 219 WP_019237985.1 YdcH family protein -
  ABFU14_RS18035 (ABFU14_18020) - 4174791..4175681 (-) 891 WP_323541903.1 hypothetical protein -
  ABFU14_RS18040 (ABFU14_18025) - 4175678..4176061 (-) 384 WP_011035838.1 DUF4398 domain-containing protein -
  ABFU14_RS18045 (ABFU14_18030) pilU 4176160..4177293 (+) 1134 WP_323541904.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABFU14_RS18050 (ABFU14_18035) maiA 4177814..4178476 (-) 663 WP_225042339.1 maleylacetoacetate isomerase -
  ABFU14_RS18055 (ABFU14_18040) - 4178520..4179509 (-) 990 WP_407471536.1 fumarylacetoacetate hydrolase family protein -
  ABFU14_RS18060 (ABFU14_18045) - 4179889..4181277 (+) 1389 WP_011035834.1 DEAD/DEAH box helicase -
  ABFU14_RS18065 (ABFU14_18050) queD 4181393..4181746 (+) 354 WP_008576903.1 6-carboxytetrahydropterin synthase QueD -
  ABFU14_RS18070 (ABFU14_18055) - 4181936..4182271 (+) 336 WP_011035833.1 phasin family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41785.08 Da        Isoelectric Point: 6.1401

>NTDB_id=1000331 ABFU14_RS18045 WP_323541904.1 4176160..4177293(+) (pilU) [Xanthomonas campestris pv. raphani strain NBC271]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALSDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVVSQRLVKGLDGRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKTGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYESASAPKISHGFV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1000331 ABFU14_RS18045 WP_323541904.1 4176160..4177293(+) (pilU) [Xanthomonas campestris pv. raphani strain NBC271]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAATGCCTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTTTACCCGCTCGGCAATACGGGGTTGCCGCCGGGGATGGTCAAGAAAATCGCTTACTCAT
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGAGCTGGAACTCAACATGGCCATCGCTCTGTCCGACGCCGGGCGC
TTCCGCGTGAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGTGCCATCCGCAGCCGGATCCCGAGCATCGA
GGAGCTCAACCTGCCGCAGGTGCTCAAGGACGTCATCATGACGCCGCGCGGGCTGGTGCTGGTGGTCGGTTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCCTCGATGATCGACCACCGCAACAGCACCACGACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAGTACCTGCACAAGCACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGACACGCACGCCTTCCAGAG
CGCGTTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGATGCCGAAACCATGGAGGCTG
CGATCGCCTTCGCCGAAACCGGTCACCTGTGCCTGGCGACGCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAAAGTGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAATCTGCGCGCAGTGGTGTCCCAGCG
CCTGGTTAAGGGCCTGGACGGGCGCCGCCGCCCGGCCACCGAGGTGCTGCTCAACACGCCGATGATCCGCGACTTGCTGC
GTCGCGGGCAGGTGCACGAGGTCAAGCAGGCGATGGAGGAGTCGCTGGAAGAAGGCATGCAGACCTTCGACCAGTGTCTG
TTCCGGATGGTCAAGACCGGCGAGATCGAGCAGGAGGAGGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCGCTGAA
ATTCCGTCTTTCCGAAGGCGGCTCCGGCGAACACGATCCGTATGCCGATTACGAGTCTGCCTCGGCGCCGAAGATCAGCC
ACGGGTTTGTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(76-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.368

95.225

0.499
  pilU Vibrio cholerae strain A1552

49.167

95.491

0.469
  pilU Acinetobacter baylyi ADP1

49.435

93.899

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.764

100

0.454
  pilT Pseudomonas aeruginosa PAK

42.604

89.655

0.382
  pilT Legionella pneumophila strain ERS1305867

41.42

89.655

0.371
  pilT Legionella pneumophila strain Lp02

41.42

89.655

0.371
  pilT Acinetobacter baumannii D1279779

41.124

89.655

0.369
  pilT Acinetobacter nosocomialis M2

41.124

89.655

0.369
  pilT Acinetobacter baumannii strain A118

41.124

89.655

0.369
  pilT Acinetobacter baylyi ADP1

40.588

90.186

0.366
  pilT Pseudomonas stutzeri DSM 10701

40.828

89.655

0.366

Multiple sequence alignment