Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL191_RS00420 Genome accession   NZ_LR134290
Coordinates   96573..97691 (+) Length   372 a.a.
NCBI ID   WP_041975719.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NCTC10897     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 91573..102691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL191_RS00400 (NCTC10897_00080) rsmB 92497..93810 (-) 1314 WP_041975713.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  EL191_RS00405 (NCTC10897_00081) fmt 93807..94739 (-) 933 WP_041975716.1 methionyl-tRNA formyltransferase -
  EL191_RS00410 (NCTC10897_00082) def 94796..95302 (-) 507 WP_013713230.1 peptide deformylase -
  EL191_RS00415 (NCTC10897_00083) tsaP 95455..96492 (+) 1038 WP_017361050.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  EL191_RS00420 (NCTC10897_00084) dprA 96573..97691 (+) 1119 WP_041975719.1 DNA-processing protein DprA Machinery gene
  EL191_RS00425 (NCTC10897_00085) - 97775..98332 (+) 558 WP_017361052.1 L-threonylcarbamoyladenylate synthase -
  EL191_RS00430 (NCTC10897_00086) - 98407..99384 (-) 978 WP_041975721.1 NADPH:quinone reductase -
  EL191_RS00435 (NCTC10897_00087) hemF 99532..100440 (+) 909 WP_026041908.1 oxygen-dependent coproporphyrinogen oxidase -
  EL191_RS00440 (NCTC10897_00088) aroE 100603..101424 (+) 822 WP_041975723.1 shikimate dehydrogenase -
  EL191_RS00445 (NCTC10897_00089) - 101430..101780 (+) 351 WP_041975725.1 DOPA 4,5-dioxygenase family protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39379.09 Da        Isoelectric Point: 6.9183

>NTDB_id=1000083 EL191_RS00420 WP_041975719.1 96573..97691(+) (dprA) [Ectopseudomonas mendocina strain NCTC10897]
MPTSFSLCPTLSPAELEARLRLHSLPELGPRRFRKLLSAFDSASAALSAPASAWRALGLPAACAEPRRSEDVRERARSAL
QWLEQPGQHLLMWDDPRYPALLAELADAPPLLFVAGEPSVLESPQLAMVGSRRASQPGLDNARAFARSLAGGGFVITSGL
ALGIDGAAHQGALEGDGKTVAVLGTGLQCLYPRRHVGLAARIIEQGGALVSELPLDCPPQASNFPRRNRIISGLSLGVLV
VEASPSSGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGATLVESIEHILEALRGWQTPASAPLSDASLKRVEH
PLLHLLHAAPHSTEALVQASGWPLAQVLAALTELELDGLVCNEAGRWLARNP

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=1000083 EL191_RS00420 WP_041975719.1 96573..97691(+) (dprA) [Ectopseudomonas mendocina strain NCTC10897]
ATGCCTACATCCTTCTCGCTTTGCCCCACTCTTTCCCCTGCCGAGCTTGAAGCTCGCCTGCGCCTGCACTCGTTGCCGGA
ATTGGGGCCGCGACGGTTTCGCAAACTGTTGAGTGCCTTCGACAGTGCCTCGGCTGCGCTGAGTGCGCCTGCCAGTGCCT
GGCGGGCGCTGGGCTTGCCTGCCGCCTGCGCCGAGCCTCGGCGCAGTGAGGACGTCCGAGAGCGGGCGCGGTCTGCGCTG
CAGTGGCTGGAACAGCCCGGTCAACATCTGCTGATGTGGGACGATCCGCGTTACCCGGCGCTGTTGGCCGAGTTGGCCGA
CGCACCGCCGCTGCTGTTCGTGGCGGGCGAACCAAGTGTGCTGGAATCGCCGCAACTGGCCATGGTCGGTAGCCGGCGCG
CCTCGCAGCCCGGCCTGGATAACGCGCGCGCCTTTGCCCGCAGCTTGGCCGGTGGTGGCTTCGTCATCACCAGCGGGTTG
GCGTTGGGCATCGATGGTGCTGCACATCAGGGGGCGCTGGAAGGCGACGGCAAAACGGTAGCCGTGCTGGGTACTGGCCT
GCAGTGCCTGTATCCGCGACGGCATGTGGGGCTGGCTGCGCGGATCATCGAGCAGGGTGGTGCACTGGTCTCGGAGTTGC
CGCTGGACTGTCCACCGCAGGCCAGCAACTTCCCGCGGCGCAACAGGATAATCAGCGGCCTTTCGCTGGGTGTGCTGGTG
GTCGAGGCCAGCCCTTCCAGTGGTTCGCTGATCACTGCGCGGCTGGCCGCAGAGCAGGGACGTGAGGTCTATGCCATTCC
CGGTTCCATTCACCATCCTGGCGCGCGCGGCTGCCACCAACTGATTCGCGATGGCGCCACGCTGGTGGAGAGCATCGAGC
ATATTCTCGAAGCACTTCGTGGTTGGCAGACGCCGGCCTCCGCTCCTTTGTCCGATGCATCGCTGAAACGCGTCGAGCAC
CCGTTACTCCACTTGCTGCATGCTGCCCCCCATAGCACCGAGGCGTTGGTCCAGGCCAGCGGCTGGCCATTGGCGCAGGT
GCTGGCGGCTTTGACCGAGCTGGAGCTCGACGGTCTGGTTTGCAACGAAGCCGGGCGTTGGCTGGCGCGCAATCCCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(83-290)

DprA winged helix domain (WHD_DprA)

(307-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

45.73

97.581

0.446
  dprA Legionella pneumophila strain ERS1305867

45.07

95.43

0.43
  dprA Acinetobacter baylyi ADP1

42.778

96.774

0.414
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.341

88.172

0.409
  dprA Vibrio cholerae strain A1552

46.341

88.172

0.409
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.385

96.237

0.379
  dprA Acinetobacter baumannii D1279779

39.943

93.548

0.374
  dprA Glaesserella parasuis strain SC1401

48.264

77.419

0.374
  dprA Acinetobacter baumannii strain A118

39.655

93.548

0.371
  dprA Haemophilus influenzae Rd KW20

48.929

75.269

0.368
  dprA Neisseria gonorrhoeae strain FA1090

45.424

79.301

0.36
  dprA Neisseria meningitidis strain C311

46.048

78.226

0.36
  dprA Neisseria meningitidis MC58

46.048

78.226

0.36

Multiple sequence alignment