NT genes of 'Snodgrassella alvi strain Amel02'
In this species, transformation by exogenous DNA is regulated by the presence of a specific DNA Uptake Sequence (DUS) (PMID: 23637627).
| Gene name | Gene type | Function | Related MGE | Organism | Genome accession | Locus tag | Protein ID |
|---|---|---|---|---|---|---|---|
 recX |
Regulator | Competence regulation | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS00900 | WP_041880343.1 |
| comM |
Machinery gene | DNA processing | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS01145 | WP_370385973.1 |
| radA |
Machinery gene | Homologous recombination | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS02330 | WP_025330660.1 |
| pilA |
Machinery gene | DNA binding and uptake | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS04805 | WP_370386204.1 |
| ssb |
Machinery gene | DNA processing | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS05295 | WP_025331214.1 |
| pilR |
Regulator | Competence regulation | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS05370 | WP_370385553.1 |
| pilA |
Machinery gene | DNA binding and uptake | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS07880 | WP_370385712.1 |
| pilD |
Machinery gene | DNA binding and uptake | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS08965 | WP_370385764.1 |
| pilG |
Machinery gene | DNA binding and uptake | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS08970 | WP_025329863.1 |
| pilF |
Machinery gene | DNA binding and uptake | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS08975 | WP_370385765.1 |
| pilT |
Machinery gene | DNA binding and uptake | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS09070 | WP_084552601.1 |
| dprA |
Machinery gene | DNA processing | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS09095 | WP_370385778.1 |
| recA |
Machinery gene | Homologous recombination | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS09285 | WP_025329915.1 |
| comL |
Machinery gene | DNA binding and uptake | - | Snodgrassella alvi strain Amel02 | NZ_CP159911 | ABW387_RS10045 | WP_038648650.1 |
Experimentally validated
Bioinformatically predicted