Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABW387_RS02330 Genome accession   NZ_CP159911
Coordinates   518704..520077 (+) Length   457 a.a.
NCBI ID   WP_025330660.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 513704..525077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW387_RS02315 (ABW387_11010) yajC 515367..515666 (-) 300 WP_025330657.1 preprotein translocase subunit YajC -
  ABW387_RS02320 (ABW387_11005) radC 515791..516465 (-) 675 WP_084551887.1 DNA repair protein RadC -
  ABW387_RS02325 (ABW387_11000) putP 516593..518080 (-) 1488 WP_172397116.1 sodium/proline symporter PutP -
  ABW387_RS02330 (ABW387_10995) radA 518704..520077 (+) 1374 WP_025330660.1 DNA repair protein RadA Machinery gene
  ABW387_RS02335 (ABW387_10990) - 520167..520469 (+) 303 WP_367426478.1 putative quinol monooxygenase -
  ABW387_RS02340 (ABW387_10985) - 520612..521262 (+) 651 WP_367464242.1 fumarylacetoacetate hydrolase family protein -
  ABW387_RS02345 (ABW387_10980) - 521522..522925 (+) 1404 WP_370386037.1 glycosyltransferase family 39 protein -
  ABW387_RS02350 (ABW387_16795) - 523010..523969 (+) 960 WP_370386038.1 glycosyltransferase family 2 protein -
  ABW387_RS02355 (ABW387_10965) - 523969..524382 (+) 414 WP_084551893.1 GtrA family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49051.36 Da        Isoelectric Point: 7.1546

>NTDB_id=1016685 ABW387_RS02330 WP_025330660.1 518704..520077(+) (radA) [Snodgrassella alvi strain Amel02]
MVKQKTQFQCRSCGGSSPKWQGRCPHCGEWNTLEETTVLSAPSSGSRFQSWASSESAVQLLAEVSAVEIQRTPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAEQESVLYVSGEESAQQVALRAQRLGVHADKVHLLAEIRVEAISAV
IARQKPRVVVIDSIQTMYSDGITSAPGSVSQVRECAAQLTRLAKQQGISMLLVGHVTKDGAIAGPRVLEHMVDTVLYFEG
ETHSNYRMIRAIKNRFGAANELGVFAMTEKGLKGVSNPSALFLSSYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFA
PKRLTVGLAQERLAMLLAVLNRHAGIACYDQDVFLNAVGGVKITEPAADLAVILAMLSSYRNRPLPEKLIVFGEVGLSGE
IRPVPRGQERLREAEKLGFTHAIVPAANCPKRTADFPRLTIIGVNSVQEGVDATRRD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1016685 ABW387_RS02330 WP_025330660.1 518704..520077(+) (radA) [Snodgrassella alvi strain Amel02]
ATGGTAAAGCAGAAAACTCAGTTTCAATGTCGCAGTTGTGGTGGAAGCTCACCTAAATGGCAGGGGCGTTGTCCTCATTG
TGGCGAATGGAATACTCTGGAAGAAACAACAGTTTTATCTGCACCTTCTTCTGGCAGCCGTTTTCAATCATGGGCATCAA
GTGAATCGGCGGTACAGTTACTGGCAGAAGTCAGTGCGGTTGAAATACAGAGAACGCCAACAGGAATGGGTGAGCTGGAC
AGAGTACTTGGAGGTGGTTTAGTAGACGGAGCTGTTATTTTGCTAGGCGGAGATCCGGGTATTGGTAAATCTACATTATT
GCTGCAAACAATAGCCTTGATGGCCGAACAGGAATCCGTATTGTATGTTTCTGGAGAAGAGTCAGCTCAGCAGGTTGCTT
TACGTGCACAGCGTCTTGGTGTACATGCAGACAAAGTTCATTTACTGGCAGAAATACGTGTAGAGGCAATTAGTGCAGTT
ATTGCACGCCAAAAACCCAGAGTGGTAGTAATCGATTCTATTCAGACCATGTATTCTGATGGTATTACTTCAGCACCCGG
TTCTGTATCACAGGTTAGGGAATGTGCAGCCCAATTAACCCGCCTGGCAAAACAACAGGGTATCAGCATGTTGCTGGTTG
GTCATGTAACCAAAGATGGCGCGATTGCCGGTCCCCGGGTGCTGGAGCATATGGTGGATACGGTATTGTATTTTGAAGGG
GAAACTCATTCAAATTATCGTATGATTCGTGCTATTAAAAACCGTTTTGGTGCCGCTAATGAGTTAGGTGTTTTTGCAAT
GACAGAAAAAGGGCTGAAGGGGGTTTCCAATCCTTCAGCATTGTTTTTATCCAGTTATCGCGATGATGTTCCCGGCTCAT
GCGTTCTCGTTACTCAGGAAGGTTCGCGCCCCTTACTGGTAGAAATTCAGGCACTTGTTGATGATGCTCATGGTTTTGCT
CCAAAACGATTAACTGTAGGGCTGGCTCAGGAGCGTCTGGCCATGTTGCTGGCTGTGCTGAACCGTCATGCAGGTATCGC
TTGTTATGATCAGGACGTGTTTCTTAATGCTGTAGGTGGTGTGAAAATTACTGAACCGGCAGCAGATCTGGCTGTGATTC
TGGCCATGCTTTCAAGCTATCGTAATCGACCATTACCGGAAAAGCTGATTGTATTCGGAGAAGTCGGGTTATCAGGTGAA
ATTCGTCCTGTTCCGCGCGGACAGGAACGTTTGCGAGAGGCAGAAAAACTTGGATTTACTCATGCCATAGTACCTGCAGC
TAATTGTCCCAAACGGACGGCAGATTTTCCGAGGCTAACTATTATCGGGGTAAATTCGGTACAGGAAGGTGTAGATGCTA
CACGACGTGATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.561

99.781

0.495
  radA Streptococcus pneumoniae Rx1

48

98.468

0.473
  radA Streptococcus pneumoniae D39

48

98.468

0.473
  radA Streptococcus pneumoniae TIGR4

48

98.468

0.473
  radA Streptococcus pneumoniae R6

48

98.468

0.473
  radA Streptococcus mitis NCTC 12261

47.778

98.468

0.47
  radA Streptococcus mitis SK321

47.884

98.249

0.47

Multiple sequence alignment