Detailed information NTG1016696

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABW387_RS08965
• Genome accession: NZ_CP159911
• Coordinates: 2053058..2053909 (-)
• Length: 283 a.a.
• NCBI ID: WP_370385764.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2048058..2058909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABW387_RS08930 (ABW387_18325)	murA	2048165..2049424 (-)	1260	WP_198224846.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABW387_RS08935 (ABW387_01140)	-	2049464..2049712 (-)	249	WP_025329856.1	BolA family protein	-
ABW387_RS08940 (ABW387_01135)	-	2049767..2050528 (-)	762	WP_370385762.1	ABC transporter permease	-
ABW387_RS08945 (ABW387_01130)	-	2050525..2051445 (-)	921	WP_370385763.1	ABC transporter ATP-binding protein	-
ABW387_RS08950 (ABW387_01125)	yacG	2051492..2051689 (-)	198	WP_025329859.1	DNA gyrase inhibitor YacG	-
ABW387_RS08955 (ABW387_01120)	zapD	2051689..2052441 (-)	753	WP_025329860.1	cell division protein ZapD	-
ABW387_RS08960 (ABW387_18330)	coaE	2052447..2053061 (-)	615	WP_084551530.1	dephospho-CoA kinase	-
ABW387_RS08965 (ABW387_01105)	pilD	2053058..2053909 (-)	852	WP_370385764.1	A24 family peptidase	Machinery gene
ABW387_RS08970 (ABW387_01100)	pilG	2053916..2055148 (-)	1233	WP_025329863.1	type II secretion system F family protein	Machinery gene
ABW387_RS08975 (ABW387_01095)	pilF	2055197..2056876 (-)	1680	WP_370385765.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABW387_RS08980 (ABW387_01090)	recJ	2057078..2058775 (-)	1698	WP_370385766.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31284.29 Da
• Isoelectric Point: 8.2995

>NTDB_id=1016696 ABW387_RS08965 WP_370385764.1 2053058..2053909(-) (pilD) [Snodgrassella alvi strain Amel02]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWLAEARMALQLPAEHTSRFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=1016696 ABW387_RS08965 WP_370385764.1 2053058..2053909(-) (pilD) [Snodgrassella alvi strain Amel02]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCTGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCGCTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTGGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCCGAAACCCAGCTGTTACCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCGTTGGGCTATCTGAGCTTGTG
GTCACTTTTCTGGTTATTCAAACTACTAACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTACCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTATTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.343	94.7	0.534
pilD	Vibrio cholerae strain A1552	49.462	98.587	0.488
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Acinetobacter nosocomialis M2	50.185	95.76	0.481
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449