Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABW387_RS05295 Genome accession   NZ_CP159911
Coordinates   1205273..1205809 (-) Length   178 a.a.
NCBI ID   WP_025331214.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1200273..1210809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW387_RS05270 (ABW387_06620) - 1201429..1202049 (-) 621 WP_041880460.1 RlmE family RNA methyltransferase -
  ABW387_RS05275 (ABW387_06615) - 1202228..1202782 (-) 555 WP_370386240.1 hypothetical protein -
  ABW387_RS05280 (ABW387_06610) yhbY 1203081..1203371 (+) 291 WP_367467098.1 ribosome assembly RNA-binding protein YhbY -
  ABW387_RS05285 (ABW387_06605) greA 1203458..1203934 (-) 477 WP_367467095.1 transcription elongation factor GreA -
  ABW387_RS05290 (ABW387_17485) - 1204586..1205020 (+) 435 WP_279031587.1 hypothetical protein -
  ABW387_RS05295 (ABW387_06595) ssb 1205273..1205809 (-) 537 WP_025331214.1 single-stranded DNA-binding protein Machinery gene
  ABW387_RS05300 (ABW387_06590) - 1205894..1206517 (-) 624 WP_084553057.1 lytic transglycosylase domain-containing protein -
  ABW387_RS05305 (ABW387_06585) - 1206740..1207102 (-) 363 WP_367467090.1 VacJ -
  ABW387_RS05310 (ABW387_06580) - 1207181..1208101 (-) 921 WP_370386241.1 VacJ family lipoprotein -
  ABW387_RS05315 (ABW387_17490) - 1208098..1208382 (-) 285 WP_084547256.1 lipid asymmetry maintenance protein MlaB -
  ABW387_RS05320 (ABW387_06570) - 1208385..1208981 (-) 597 WP_025331219.1 phospholipid-binding protein MlaC -
  ABW387_RS05325 (ABW387_06565) mlaD 1209039..1209548 (-) 510 WP_279028873.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABW387_RS05330 (ABW387_06560) mlaE 1209573..1210349 (-) 777 WP_078475685.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19505.43 Da        Isoelectric Point: 5.3011

>NTDB_id=1016690 ABW387_RS05295 WP_025331214.1 1205273..1205809(-) (ssb) [Snodgrassella alvi strain Amel02]
MSVNKVILVGRLGRDPETRYMPSGDAITNFSIATDEQWRDRNGERQTRTEWHNITLFGKLGEIASQYLRKGSQVFIEGRI
QSRKYTGKDGIERTAYDIIGSEMKMLGSRNDSASGSGNSYDQMNSGTNYAQGGGNYNQDGYDAAPAASSPPPAAPRRQAP
RPAPTPAPVDDIDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1016690 ABW387_RS05295 WP_025331214.1 1205273..1205809(-) (ssb) [Snodgrassella alvi strain Amel02]
ATGTCTGTTAATAAAGTCATCCTGGTTGGCCGTCTGGGTCGTGATCCTGAAACACGATATATGCCCAGCGGAGATGCAAT
AACCAATTTTTCCATAGCTACTGATGAACAGTGGCGTGACCGTAATGGTGAACGCCAGACTCGTACTGAATGGCATAATA
TTACTCTGTTCGGTAAATTGGGTGAGATAGCCAGCCAGTATTTGCGTAAAGGCAGTCAGGTGTTTATTGAGGGCAGGATT
CAAAGTCGTAAATATACCGGTAAAGATGGTATCGAACGCACCGCATACGATATTATCGGCAGTGAAATGAAAATGCTGGG
CAGTCGCAATGACAGTGCTTCCGGCTCAGGTAATAGCTATGATCAGATGAATAGCGGAACCAACTACGCACAGGGAGGAG
GTAACTATAATCAGGACGGTTATGATGCTGCACCTGCTGCTTCCAGTCCGCCACCGGCAGCTCCGCGCCGTCAGGCACCA
CGACCGGCACCTACTCCTGCTCCGGTAGATGATATTGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

61.413

100

0.635
  ssb Neisseria meningitidis MC58

60.674

100

0.607
  ssb Vibrio cholerae strain A1552

43.784

100

0.455
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.455

Multiple sequence alignment