Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABW387_RS01145 Genome accession   NZ_CP159911
Coordinates   249907..251400 (-) Length   497 a.a.
NCBI ID   WP_370385973.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 244907..256400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW387_RS01125 (ABW387_12880) - 246153..247304 (-) 1152 WP_370385972.1 ATP phosphoribosyltransferase regulatory subunit -
  ABW387_RS01130 (ABW387_12875) - 247456..248274 (-) 819 WP_084547856.1 undecaprenyl-diphosphate phosphatase -
  ABW387_RS01135 (ABW387_16505) - 248373..249068 (-) 696 WP_025330427.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABW387_RS01140 (ABW387_16510) - 249098..249808 (-) 711 WP_180296322.1 SPOR domain-containing protein -
  ABW387_RS01145 (ABW387_12845) comM 249907..251400 (-) 1494 WP_370385973.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABW387_RS01150 (ABW387_12840) - 251412..251717 (-) 306 WP_078475299.1 accessory factor UbiK family protein -
  ABW387_RS01155 (ABW387_12835) - 251807..252247 (-) 441 WP_367464602.1 hypothetical protein -
  ABW387_RS01160 (ABW387_12830) - 252335..253126 (-) 792 WP_370385974.1 NUDIX domain-containing protein -
  ABW387_RS01165 (ABW387_12825) acpS 253123..253509 (-) 387 WP_084564923.1 holo-ACP synthase -
  ABW387_RS01170 (ABW387_12820) pdxJ 253539..254270 (-) 732 WP_370385975.1 pyridoxine 5'-phosphate synthase -
  ABW387_RS01175 (ABW387_12815) yfaE 254350..254661 (-) 312 WP_025330435.1 class I ribonucleotide reductase maintenance protein YfaE -
  ABW387_RS01180 (ABW387_12810) nrdB 254717..255850 (-) 1134 WP_144235867.1 class Ia ribonucleoside-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54132.90 Da        Isoelectric Point: 7.4318

>NTDB_id=1016682 ABW387_RS01145 WP_370385973.1 249907..251400(-) (comM) [Snodgrassella alvi strain Amel02]
MSWAVVYSRALAGMAAPLVEVEAHLANGLPAFSIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQIDGTNLHQYELAGELGLSGQIRPIRGAIAMAEAARQHQRSFILPSDNAFQTALLPDAHVYGADTL
LAVAAHLNQDQPLSPVDVQHIQQPDETNYPDMADVRGQQTARLALEIAAAGGHSILMSGPPGTGKSMLAQRLPGILPPLT
AKELVSVWSLQSLLPHGQQKYRLNRPFRSPHHSTSAVALVGGGSDPRPGEISLAHHGILFLDELPEFDRKVLEVLREPLE
SGEIHISRAARQATYPAEFQLIAAMNPCPCGYLGHPVKPCRCTPEAITRYRDKISGPLLDRIDLIIEVPSLPASDLLQQA
NGENSSSIRERVRTARSRQYQRQGKINAQLSNRELDDIARITPEAKQTLASVMEKLSLSARSFHRILRIARTLADMNDIH
DVEASHILRAISFRRAL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1016682 ABW387_RS01145 WP_370385973.1 249907..251400(-) (comM) [Snodgrassella alvi strain Amel02]
ATGTCATGGGCAGTTGTTTATAGTCGTGCTCTGGCTGGCATGGCAGCACCACTTGTAGAGGTAGAAGCTCATCTGGCCAA
CGGCTTACCTGCATTCAGCATTGTTGGTCTGCCGGATACAGAAGTTAAAGAAAGCAGAGATCGGGTAAGAGCGGCTATTA
TTCAGTCCGGTTTTGACTTTCCGGCTAAAAAAATTACCGTTAATCTGGCACCTGCTGATTTACCCAAAGAATCAGGCCGG
TTTGATTTACCGATAGCTATCGGCATACTGGCAGCATCCGGTCAGATTGATGGTACCAATCTGCATCAGTATGAACTGGC
CGGAGAACTTGGCCTGTCCGGTCAGATCAGGCCTATCCGCGGGGCTATTGCCATGGCAGAAGCAGCCAGACAGCACCAGC
GTTCATTTATTCTGCCCTCAGATAATGCTTTTCAAACTGCCCTGTTACCCGATGCGCATGTTTATGGCGCCGATACATTA
TTGGCAGTAGCAGCTCATCTTAATCAGGACCAACCACTTTCCCCTGTTGATGTACAACATATACAACAGCCTGATGAAAC
AAACTATCCTGATATGGCCGATGTACGCGGGCAACAAACAGCCAGACTGGCACTGGAGATCGCCGCAGCCGGCGGTCACA
GTATCCTCATGTCCGGACCGCCAGGAACCGGTAAATCTATGCTGGCACAGCGTCTACCCGGTATCTTACCGCCACTTACA
GCCAAAGAACTCGTCAGCGTCTGGTCATTACAGTCATTGTTGCCTCACGGACAGCAAAAATACCGACTGAACCGGCCATT
TCGCTCGCCCCATCATAGTACTTCGGCTGTTGCACTGGTAGGTGGCGGCTCTGATCCCCGACCTGGTGAAATTTCACTGG
CACATCATGGTATTTTATTTTTGGACGAACTACCGGAATTCGACCGGAAAGTTCTTGAAGTTCTGCGAGAACCACTGGAA
AGCGGAGAAATTCATATATCACGCGCAGCACGTCAGGCTACTTATCCGGCTGAATTCCAGCTGATAGCAGCAATGAATCC
CTGCCCTTGTGGTTATCTCGGACATCCAGTTAAACCATGTCGCTGTACGCCCGAAGCCATAACCCGTTACCGTGATAAAA
TTTCCGGTCCGCTGCTTGACCGTATAGATTTGATAATTGAAGTGCCCAGTTTACCAGCCAGTGATCTGTTACAGCAGGCA
AACGGCGAAAACAGCAGCAGTATTCGTGAGCGTGTCAGAACAGCACGCTCGCGCCAGTATCAGCGTCAGGGTAAAATCAA
TGCTCAACTGAGCAACCGTGAACTGGATGATATAGCCCGAATCACCCCTGAAGCCAAACAAACCCTGGCCAGTGTGATGG
AAAAATTGTCGCTGTCAGCACGCAGTTTTCATCGTATTTTACGTATTGCACGTACATTAGCAGATATGAATGATATACAT
GATGTTGAAGCCAGTCACATTTTACGCGCCATAAGCTTCCGCCGTGCTTTATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.602

100

0.507
  comM Glaesserella parasuis strain SC1401

50

100

0.505
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Haemophilus influenzae Rd KW20

49.2

100

0.495
  comM Vibrio campbellii strain DS40M4

48.8

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.4

100

0.447

Multiple sequence alignment