Detailed information NTG1016691

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABW387_RS05370
• Genome accession: NZ_CP159911
• Coordinates: 1218591..1220069 (-)
• Length: 492 a.a.
• NCBI ID: WP_370385553.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel02
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1213591..1225069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABW387_RS05355 (ABW387_06510)	amgK	1215708..1216712 (+)	1005	WP_084565505.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABW387_RS05360 (ABW387_17505)	-	1216783..1217760 (-)	978	WP_370385551.1	hypothetical protein	-
ABW387_RS05365 (ABW387_17510)	-	1217830..1218591 (-)	762	WP_370385552.1	class I SAM-dependent methyltransferase	-
ABW387_RS05370 (ABW387_17515)	pilR	1218591..1220069 (-)	1479	WP_370385553.1	sigma-54-dependent transcriptional regulator	Regulator
ABW387_RS05375 (ABW387_17520)	-	1220062..1221636 (-)	1575	WP_370385554.1	nitrogen regulation protein NR(II)	-
ABW387_RS05380 (ABW387_06435)	parC	1221643..1223961 (-)	2319	WP_370385555.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 492 a.a.
• Molecular weight: 55239.05 Da
• Isoelectric Point: 5.1258

>NTDB_id=1016691 ABW387_RS05370 WP_370385553.1 1218591..1220069(-) (pilR) [Snodgrassella alvi strain Amel02]
MNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHNLD
IPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSEIKQKNEDASATVNE
QPVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESGQF
RQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGISFR
SMRYRMERLGIV

Nucleotide

• Length: 1479 bp

>NTDB_id=1016691 ABW387_RS05370 WP_370385553.1 1218591..1220069(-) (pilR) [Snodgrassella alvi strain Amel02]
ATGAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGAGTTAAC
CCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATGCTTTCT
CCCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATCACTGCTCATAATCTGGAT
ATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTTGATTACTT
ACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAACCGAAA
TAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAATTAAACAAAAAAATGAAGATGCTTCCGCAACGGTTAACGAA
CAGCCGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACTGAAGTACGTCAGTTGATCAGTAAGCTGGCTAAGAG
TAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCACGCAGTATTCATGAACAGTCAGAAC
GCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCCGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCTGGATGA
AGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGCGCCATTCAGGAACGTGCTGTACGCCGGATTGGCGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGTCAGTTT
CGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTTGCCGCA
GTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCACTGTTGC
AATACAGTTATCCAGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATCGCACTGTCGAAAAATCATATTATT
GAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAGTAATCT
ATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAATAGAGA
GAAAAATCCTGGAACAGGCTTTGGCGCAAACCCGATATAACCGAACACAGGCAGCCAAATTACTGGGTATCAGTTTTCGT
TCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (449-488)

• Response regulator receiver domain (Response_reg) (11-120)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.346	98.171	0.504
pilR	Acinetobacter baumannii strain A118	41.429	99.593	0.413