Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABW387_RS10045 Genome accession   NZ_CP159911
Coordinates   2300110..2300916 (-) Length   268 a.a.
NCBI ID   WP_038648650.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2295110..2305916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW387_RS10025 (ABW387_15550) - 2296192..2296530 (+) 339 WP_370385846.1 DUF350 domain-containing protein -
  ABW387_RS10030 (ABW387_15545) - 2296562..2297605 (+) 1044 WP_370385847.1 SPFH domain-containing protein -
  ABW387_RS10035 (ABW387_15540) - 2297614..2299452 (+) 1839 WP_084553292.1 DUF4178 domain-containing protein -
  ABW387_RS10040 (ABW387_15530) speD 2299440..2299817 (+) 378 WP_370385848.1 adenosylmethionine decarboxylase -
  ABW387_RS10045 (ABW387_15525) comL 2300110..2300916 (-) 807 WP_038648650.1 outer membrane protein assembly factor BamD Machinery gene
  ABW387_RS10050 (ABW387_18590) rluD 2300915..2302045 (+) 1131 WP_370385849.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABW387_RS10055 (ABW387_15505) pgeF 2302055..2302846 (+) 792 WP_370385850.1 peptidoglycan editing factor PgeF -
  ABW387_RS10060 (ABW387_15500) - 2303166..2303693 (+) 528 WP_198185623.1 DUF6882 domain-containing protein -
  ABW387_RS10065 (ABW387_15495) - 2304095..2304826 (+) 732 WP_370385851.1 beta-ketoacyl synthase chain length factor -
  ABW387_RS10070 (ABW387_15490) - 2304868..2305593 (+) 726 WP_232336239.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABW387_RS10075 (ABW387_15485) - 2305597..2305854 (+) 258 WP_037392583.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30962.90 Da        Isoelectric Point: 6.6493

>NTDB_id=1016702 ABW387_RS10045 WP_038648650.1 2300110..2300916(-) (comL) [Snodgrassella alvi strain Amel02]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYADDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1016702 ABW387_RS10045 WP_038648650.1 2300110..2300916(-) (comL) [Snodgrassella alvi strain Amel02]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTTCCTTATGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAGAACGATAAGGCACTGGCTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCACTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGACGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGCTA
TTATATGAAGCGCGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAACACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAGAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

67.041

99.627

0.668
  comL Neisseria gonorrhoeae MS11

66.667

99.627

0.664

Multiple sequence alignment