Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABW387_RS07880 | Genome accession | NZ_CP159911 |
| Coordinates | 1778426..1779721 (-) | Length | 431 a.a. |
| NCBI ID | WP_370385712.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Amel02 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1773426..1784721
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABW387_RS07865 (ABW387_18095) | - | 1774783..1776510 (+) | 1728 | WP_370385709.1 | AAA family ATPase | - |
| ABW387_RS07870 (ABW387_02775) | - | 1776522..1777637 (+) | 1116 | WP_370385710.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| ABW387_RS07875 (ABW387_18100) | - | 1777673..1778206 (-) | 534 | WP_370385711.1 | hypothetical protein | - |
| ABW387_RS07880 (ABW387_02765) | pilA | 1778426..1779721 (-) | 1296 | WP_370385712.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABW387_RS07885 (ABW387_02760) | - | 1779937..1780551 (-) | 615 | WP_367465992.1 | Type 1 glutamine amidotransferase-like domain-containing protein | - |
| ABW387_RS07890 (ABW387_02755) | - | 1780596..1781147 (-) | 552 | WP_198218816.1 | 5'-3'-deoxyribonucleotidase | - |
| ABW387_RS07895 (ABW387_02750) | ruvA | 1781191..1781772 (-) | 582 | WP_303832010.1 | Holliday junction branch migration protein RuvA | - |
| ABW387_RS07900 (ABW387_02740) | - | 1781850..1782599 (-) | 750 | WP_269146745.1 | septal ring lytic transglycosylase RlpA family protein | - |
| ABW387_RS07905 (ABW387_02735) | - | 1782928..1783638 (-) | 711 | WP_367465985.1 | ComF family protein | - |
| ABW387_RS07910 (ABW387_02730) | bioH | 1783637..1784389 (+) | 753 | WP_367465982.1 | pimeloyl-ACP methyl ester esterase BioH | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 46263.62 Da Isoelectric Point: 4.5113
>NTDB_id=1016694 ABW387_RS07880 WP_370385712.1 1778426..1779721(-) (pilA) [Snodgrassella alvi strain Amel02]
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIVDDSVQTEVIPQPEPAISDPVAEKPEQADTASVQPQTETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDNKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFNARAFVDALIEDE
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIVDDSVQTEVIPQPEPAISDPVAEKPEQADTASVQPQTETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDNKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFNARAFVDALIEDE
Nucleotide
Download Length: 1296 bp
>NTDB_id=1016694 ABW387_RS07880 WP_370385712.1 1778426..1779721(-) (pilA) [Snodgrassella alvi strain Amel02]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAACAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGTTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCAGACACCGCTTCCGTTCAACCACAGACCGAAACGGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCAGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGTGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCTCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATAATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGCTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATTTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACGGCCAAAGGCGGTATACTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTGGGTGAAGGTATTGATGATTTACGCCCGTTTAATGCCCGTGCATTTGTAGATGCATT
AATTGAGGATGAATAA
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAACAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGTTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCAGACACCGCTTCCGTTCAACCACAGACCGAAACGGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCAGTTCAGACACCTGTCGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCAGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGTGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCACAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCTCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATAATAAAAAGCCCTTTGTGATTATGATGGCCGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGCTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATTTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCCCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTAG
GATTAACCGGTCTGATTGTTTCCAAACTGGATGGTACGGCCAAAGGCGGTATACTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTGGGTGAAGGTATTGATGATTTACGCCCGTTTAATGCCCGTGCATTTGTAGATGCATT
AATTGAGGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.453 |
100 |
0.657 |