NT genes of 'Snodgrassella alvi strain Acer08'


In this species, transformation by exogenous DNA is regulated by the presence of a specific DNA Uptake Sequence (DUS) (PMID: 23637627).
Evidence:

Gene name Gene type Function Related MGE Organism Genome accession Locus tag Protein ID
insolico radA Machinery gene Homologous recombination - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS01115 WP_370389024.1
insolico ssb Machinery gene DNA processing - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS01505 WP_367488214.1
insolico pilA Machinery gene DNA binding and uptake - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS03760 WP_323811348.1
insolico ssb Machinery gene DNA processing - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS04220 WP_370389268.1
insolico pilR Regulator Competence regulation - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS04295 WP_267390617.1
insolico pilA Machinery gene DNA binding and uptake - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS06680 WP_370388726.1
insolico pilD Machinery gene DNA binding and uptake - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS07815 WP_367417839.1
insolico pilG Machinery gene DNA binding and uptake - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS07820 WP_100156468.1
insolico pilF Machinery gene DNA binding and uptake - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS07825 WP_267408994.1
insolico pilT Machinery gene DNA binding and uptake - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS07915 WP_267392020.1
insolico dprA Machinery gene DNA processing - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS07940 WP_370388798.1
insolico recA Machinery gene Homologous recombination - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS08130 WP_367431260.1
insolico comL Machinery gene DNA binding and uptake - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS08720 WP_100152195.1
insolico recX Regulator Competence regulation - Snodgrassella alvi strain Acer08 NZ_CP160328 ABU615_RS10080 WP_367428384.1

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    experimental Experimentally validated     insolico Bioinformatically predicted