Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABU615_RS07940 Genome accession   NZ_CP160328
Coordinates   1775987..1777165 (+) Length   392 a.a.
NCBI ID   WP_370388798.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1770987..1782165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS07920 (ABU615_04065) - 1772078..1773286 (+) 1209 WP_370387142.1 PilT/PilU family type 4a pilus ATPase -
  ABU615_RS07925 (ABU615_04060) murU 1773392..1774096 (+) 705 WP_370388796.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABU615_RS07930 (ABU615_04055) ruvC 1774217..1774768 (+) 552 WP_267392024.1 crossover junction endodeoxyribonuclease RuvC -
  ABU615_RS07935 (ABU615_04050) - 1774878..1775663 (-) 786 WP_370388797.1 DUF2071 domain-containing protein -
  ABU615_RS07940 (ABU615_04045) dprA 1775987..1777165 (+) 1179 WP_370388798.1 DNA-processing protein DprA Machinery gene
  ABU615_RS07945 (ABU615_04040) - 1777177..1777635 (+) 459 WP_370388799.1 DUF494 family protein -
  ABU615_RS07950 (ABU615_04035) topA 1777775..1780069 (+) 2295 WP_367489752.1 type I DNA topoisomerase -
  ABU615_RS07955 (ABU615_04030) rsmD 1780149..1780721 (+) 573 WP_367577657.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABU615_RS07960 (ABU615_04025) - 1780810..1781064 (+) 255 WP_267409014.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 42468.78 Da        Isoelectric Point: 6.3682

>NTDB_id=1020498 ABU615_RS07940 WP_370388798.1 1775987..1777165(+) (dprA) [Snodgrassella alvi strain Acer08]
MNELERYAWIELALTPYIGSETFLRILKHFGSAQIALAADVAEIKPFLIRSRAGQYWRSEEARKAAEAALQWEQKHENAR
LLLLAENDYPPLLSEGLTPPPLLFIRGNIHYLQQPSLAIVGSRHATPQAMRIARDFAKALAQKEIAVISGMADGIDTAAH
QGALLGKGTTVAVWGTGIDRVYPARNKSLAAEIAEHGCIISEFPLGTRSLAGNFPRRNRLIAALSQGTLVIEAATESGSL
ITARLAGEMGREVMAIPGSIDNPLSKGCHALIKQGAKLVENLDDILHECPFLLQKTQVHSYSHQSSQFIQSDTPVLLVEE
TEDLLLDKTAVSALTSPEKQILDGLGHGIVHPDTLVSTLGIPATDVYANLMALELGGWITALPGGCYQRIKS

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1020498 ABU615_RS07940 WP_370388798.1 1775987..1777165(+) (dprA) [Snodgrassella alvi strain Acer08]
ATGAATGAGCTCGAGCGCTATGCTTGGATTGAGCTGGCATTAACCCCCTATATTGGCAGTGAAACATTTTTACGTATCTT
AAAACATTTTGGTTCGGCACAAATCGCTTTGGCCGCAGATGTGGCTGAAATTAAACCTTTCCTGATTCGTTCTCGGGCCG
GTCAATACTGGCGCAGTGAGGAAGCAAGAAAAGCAGCTGAAGCCGCCCTGCAATGGGAGCAAAAGCATGAAAATGCACGC
TTATTATTGCTGGCTGAAAATGATTATCCACCATTGCTTTCTGAAGGTTTGACACCGCCTCCATTATTATTTATACGTGG
TAACATCCATTATCTGCAACAGCCCTCATTGGCTATTGTTGGCAGCCGACATGCAACGCCACAAGCAATGCGTATTGCCC
GTGATTTTGCCAAGGCATTAGCACAAAAAGAAATTGCTGTGATATCGGGCATGGCTGATGGTATAGATACCGCAGCCCAT
CAAGGTGCTTTACTTGGCAAAGGTACTACTGTTGCCGTCTGGGGCACAGGAATTGATCGCGTGTATCCGGCACGCAACAA
ATCATTGGCTGCTGAAATTGCCGAACATGGCTGTATAATTTCAGAATTTCCACTAGGCACTCGTTCTTTGGCCGGTAACT
TTCCCCGTCGCAATCGCCTGATTGCAGCACTCAGCCAAGGTACCCTAGTGATAGAGGCTGCAACCGAATCTGGCTCCCTG
ATTACTGCGCGATTGGCCGGTGAAATGGGTCGTGAAGTTATGGCAATACCTGGTTCGATTGATAACCCATTAAGCAAAGG
TTGTCATGCATTGATAAAACAGGGTGCCAAACTGGTTGAAAATCTAGATGATATACTTCATGAGTGCCCTTTCCTCTTGC
AAAAAACGCAAGTGCATTCATATAGCCATCAATCTTCACAATTTATTCAATCAGATACACCTGTACTGCTTGTTGAAGAG
ACTGAAGATCTCTTATTAGACAAAACAGCTGTATCAGCACTCACATCGCCGGAGAAACAAATTTTGGATGGATTAGGTCA
TGGTATCGTACATCCAGATACACTGGTCTCAACACTTGGCATCCCTGCTACAGATGTGTATGCTAATCTTATGGCACTGG
AGCTAGGTGGCTGGATTACCGCACTGCCGGGTGGTTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(330-385)

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

58.049

100

0.607
  dprA Neisseria meningitidis MC58

58.049

100

0.607
  dprA Neisseria gonorrhoeae strain FA1090

58.706

100

0.602
  dprA Neisseria gonorrhoeae MS11

58.209

100

0.597
  dprA Vibrio cholerae strain A1552

37.975

100

0.383
  dprA Vibrio campbellii strain DS40M4

37.113

98.98

0.367

Multiple sequence alignment