Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABU615_RS08720 Genome accession   NZ_CP160328
Coordinates   1959810..1960616 (-) Length   268 a.a.
NCBI ID   WP_100152195.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1954810..1965616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS08700 (ABU615_02985) - 1955728..1956126 (+) 399 WP_100139677.1 DUF350 domain-containing protein -
  ABU615_RS08705 (ABU615_02980) - 1956155..1957186 (+) 1032 WP_100139678.1 SPFH domain-containing protein -
  ABU615_RS08710 (ABU615_02970) - 1957195..1959057 (+) 1863 WP_370388846.1 DUF4178 domain-containing protein -
  ABU615_RS08715 (ABU615_02965) speD 1959057..1959422 (+) 366 WP_370388575.1 adenosylmethionine decarboxylase -
  ABU615_RS08720 (ABU615_02960) comL 1959810..1960616 (-) 807 WP_100152195.1 outer membrane protein assembly factor BamD Machinery gene
  ABU615_RS08725 (ABU615_02955) rluD 1960615..1961739 (+) 1125 WP_370388847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABU615_RS08730 (ABU615_02950) pgeF 1961752..1962546 (+) 795 WP_370388848.1 peptidoglycan editing factor PgeF -
  ABU615_RS08735 (ABU615_15430) - 1962631..1962780 (-) 150 WP_267391427.1 hypothetical protein -
  ABU615_RS08740 (ABU615_15435) - 1963070..1963294 (-) 225 WP_370388849.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31068.89 Da        Isoelectric Point: 6.0347

>NTDB_id=1020500 ABU615_RS08720 WP_100152195.1 1959810..1960616(-) (comL) [Snodgrassella alvi strain Acer08]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQSRFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVNKLAKQDWSDRDPKANREAYTTFAQLVEYFPQS
KYAADARDKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMVSAYEKLGEQKLSDDTKRV
LAQNFPNSPYLQSPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1020500 ABU615_RS08720 WP_100152195.1 1959810..1960616(-) (comL) [Snodgrassella alvi strain Acer08]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTTTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAGGATTC
CCAGATTACTCAGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCACACGATGAGCTGATGCATCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGTCTCGATTCCCGTATGGTTCGTATGCGGAGCAGGCTCAGCTGGACACAGCATAT
GCTTATTATAAAGATGATGAGAATGATAAAGCATTGGCGGCAATTGAACAGTTTCAGCGTTTGTACCCGCAGCACCCCAA
TATGGATTACGCTTTGTATTTGAAAGCACTGATTCAGCTGAATGAGGACAAATCCTTTGTTAATAAGCTGGCCAAACAAG
ATTGGTCTGACCGCGACCCGAAAGCTAATCGGGAAGCTTATACCACTTTTGCTCAACTAGTAGAATATTTCCCCCAAAGT
AAATATGCTGCCGATGCTCGCGATAAGATGCAGAAACTGCTGGATGCGCTTGGCGGGAATGAGCTTTCAGTAGCACGTTA
TTATATGAAACGTGGTGCATGGCTGGCGGCTGTTGGCCGTGCACAGACGGTTATTTCTCAATACCAGAATACGCCTAATG
TGGAGGAAGCACTGGCTATTATGGTTTCTGCGTATGAAAAACTGGGTGAGCAGAAGCTCAGTGATGATACTAAGCGCGTT
CTGGCACAGAATTTTCCAAATAGCCCGTATCTGCAATCTCCGTGGCAGGATCATAATGCCATTCCATGGTGGCGTTATTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

68.165

99.627

0.679
  comL Neisseria gonorrhoeae MS11

67.79

99.627

0.675

Multiple sequence alignment