Detailed information NTG1020489

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABU615_RS04295
• Genome accession: NZ_CP160328
• Coordinates: 941852..943324 (-)
• Length: 490 a.a.
• NCBI ID: WP_267390617.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer08
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 936852..948324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU615_RS04280 (ABU615_09120)	amgK	938985..939989 (+)	1005	WP_267390614.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABU615_RS04285 (ABU615_09115)	-	940043..941020 (-)	978	WP_267390615.1	hypothetical protein	-
ABU615_RS04290 (ABU615_09110)	-	941091..941852 (-)	762	WP_267390616.1	class I SAM-dependent methyltransferase	-
ABU615_RS04295 (ABU615_09105)	pilR	941852..943324 (-)	1473	WP_267390617.1	sigma-54 dependent transcriptional regulator	Regulator
ABU615_RS04300 (ABU615_09100)	-	943317..944891 (-)	1575	WP_267390618.1	ATP-binding protein	-
ABU615_RS04305 (ABU615_09090)	parC	944898..947216 (-)	2319	WP_370389270.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54531.12 Da
• Isoelectric Point: 6.0374

>NTDB_id=1020489 ABU615_RS04295 WP_267390617.1 941852..943324(-) (pilR) [Snodgrassella alvi strain Acer08]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDTITKAATTTKQTEVKSQNVSEPGRGNQ
SAAQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSARKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADSDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRLICATHKDLNALVESGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLQRILRDETMTLSPAAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSLSFDNQRNLSVDSVRNSAGENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1020489 ABU615_RS04295 WP_267390617.1 941852..943324(-) (pilR) [Snodgrassella alvi strain Acer08]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCCGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTTTGGTACTTACTGATATGCGCATGCCAGACGGATCTGGTCTGGAAATTGTAGATTATATAACCGAACACAATCTGGAT
ATTCCGATTGCTGTGATTACTGCTTACGGTAATGCAGTGCAAGCAGTGCAGGCACTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTACGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACA
CCATCACTAAAGCAGCTACAACCACTAAACAAACTGAAGTGAAATCCCAGAATGTTTCTGAGCCCGGTAGAGGGAACCAA
AGTGCTGCTCAAGAGCGACTGCTTGGTCACTCCCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCCGTCTATATTGCTGGGGAATCCGGTAGTGGAAAAGAGCAAGCAGCACGCAGTATTCATGAACAATCAGCTC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGGGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAGTGACAGAGCAGGATTTTTTCAGCATGCAGACGGTGGAACATTATTTTTGGATGA
AGTGGCTGATTTGCCATTATCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGCCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTCTTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAATCGGGACAATTT
CGGCAGGATTTGTTTTACCGTCTAAATGTGGTTTCTATAACCATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCAACGTATTCTACGTGATGAAACCATGACCCTGAGCCCGGCAGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGCAATTTCCGCGAGCTGGAAAATATATTAGAACGAGCAATTGCTTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTCTCTCATTTGATAATCAGCGTAATTTATCAGTAGATAGTGTCCGTAATTCTGC
CGGGGAAAATCCCGCAAGGACAGATTTTCAGTTTGGTCACACCCAGATTCAGGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCGCTGGCACAAACCCGTTATAACCGTACACAAGCGGCAAAACTATTGGGAATCAGCTTTAGATCAATG
CGTTATCGGATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Response regulator receiver domain (Response_reg) (11-120)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.56	99.184	0.482
pilR	Acinetobacter baumannii strain A118	42.149	98.776	0.416