Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABU615_RS04220 Genome accession   NZ_CP160328
Coordinates   928669..929199 (-) Length   176 a.a.
NCBI ID   WP_370389268.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 923669..934199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS04200 (ABU615_09210) ftsH 923988..925964 (-) 1977 WP_370389267.1 ATP-dependent zinc metalloprotease FtsH -
  ABU615_RS04205 (ABU615_09205) - 926044..926670 (-) 627 WP_367487172.1 RlmE family RNA methyltransferase -
  ABU615_RS04210 (ABU615_09200) yhbY 927012..927302 (+) 291 WP_100151723.1 ribosome assembly RNA-binding protein YhbY -
  ABU615_RS04215 (ABU615_09195) greA 927389..927865 (-) 477 WP_267390775.1 transcription elongation factor GreA -
  ABU615_RS04220 (ABU615_09190) ssb 928669..929199 (-) 531 WP_370389268.1 single-stranded DNA-binding protein Machinery gene
  ABU615_RS04225 (ABU615_09185) - 929281..929904 (-) 624 WP_267390605.1 lytic transglycosylase domain-containing protein -
  ABU615_RS04230 (ABU615_09180) - 930136..930498 (-) 363 WP_367487167.1 VacJ -
  ABU615_RS04235 (ABU615_09175) - 930572..931498 (-) 927 WP_367487164.1 VacJ family lipoprotein -
  ABU615_RS04240 (ABU615_09170) - 931495..931779 (-) 285 WP_267390608.1 lipid asymmetry maintenance protein MlaB -
  ABU615_RS04245 (ABU615_09165) - 931782..932384 (-) 603 WP_367645048.1 phospholipid-binding protein MlaC -
  ABU615_RS04250 (ABU615_09160) mlaD 932437..932946 (-) 510 WP_267408470.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABU615_RS04255 (ABU615_09155) mlaE 932971..933747 (-) 777 WP_100157254.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19088.05 Da        Isoelectric Point: 5.3011

>NTDB_id=1020488 ABU615_RS04220 WP_370389268.1 928669..929199(-) (ssb) [Snodgrassella alvi strain Acer08]
MSVNKVILVGRLGRDPETRYMPSGDAVTNFSIATDEQWRDRNGERQTRTEWHNITLFGKLGEIANQYLRKGSQVFIEGRI
QSRKYSGKDGIERTAYDIIGSEMKMLGSRNDTGAASGSYDQMGGGADYAQGGNFSQGGYDAASAASSPPPAAPRRQAPRP
APAPAPIDDIDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1020488 ABU615_RS04220 WP_370389268.1 928669..929199(-) (ssb) [Snodgrassella alvi strain Acer08]
ATGTCTGTTAATAAAGTCATCCTGGTTGGCCGTTTGGGTCGAGACCCTGAAACGCGTTATATGCCTAGTGGCGATGCCGT
AACCAACTTTTCCATTGCTACTGATGAACAGTGGCGTGACCGTAATGGCGAGCGCCAGACCCGAACCGAATGGCACAATA
TCACGCTGTTTGGCAAACTGGGCGAAATTGCCAACCAGTATCTGCGCAAGGGAAGTCAGGTATTTATCGAAGGCCGAATC
CAAAGCCGTAAATATAGTGGTAAGGATGGAATCGAACGAACGGCTTATGACATCATCGGAAGTGAAATGAAAATGCTGGG
TAGCCGCAATGATACAGGCGCTGCAAGTGGCAGCTATGATCAGATGGGCGGCGGAGCTGATTATGCTCAGGGTGGTAATT
TTAGTCAGGGTGGCTATGATGCTGCATCTGCCGCCTCTAGCCCACCACCGGCTGCTCCACGTCGTCAGGCTCCACGTCCA
GCACCTGCACCGGCACCAATAGATGATATTGATGATGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

60.963

100

0.648
  ssb Neisseria gonorrhoeae MS11

59.893

100

0.636
  ssb Glaesserella parasuis strain SC1401

45.055

100

0.466
  ssb Vibrio cholerae strain A1552

45.81

100

0.466

Multiple sequence alignment