Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABU615_RS01115 Genome accession   NZ_CP160328
Coordinates   245835..247214 (+) Length   459 a.a.
NCBI ID   WP_370389024.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240835..252214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS01100 (ABU615_13410) yajC 242565..242864 (-) 300 WP_100140160.1 preprotein translocase subunit YajC -
  ABU615_RS01105 (ABU615_13405) radC 242990..243664 (-) 675 WP_100140161.1 DNA repair protein RadC -
  ABU615_RS01110 (ABU615_14045) putP 243786..245273 (-) 1488 WP_370389023.1 sodium/proline symporter PutP -
  ABU615_RS01115 (ABU615_13390) radA 245835..247214 (+) 1380 WP_370389024.1 DNA repair protein RadA Machinery gene
  ABU615_RS01120 (ABU615_13385) - 247297..247614 (+) 318 WP_370386325.1 putative quinol monooxygenase -
  ABU615_RS01125 (ABU615_13380) - 247760..248410 (+) 651 WP_370389025.1 fumarylacetoacetate hydrolase family protein -
  ABU615_RS01130 (ABU615_14050) - 248587..250062 (+) 1476 WP_370389026.1 glycosyltransferase family 39 protein -
  ABU615_RS01135 (ABU615_14055) - 250155..251117 (+) 963 WP_370389027.1 glycosyltransferase family 2 protein -
  ABU615_RS01140 (ABU615_14060) - 251114..251527 (+) 414 WP_100140167.1 GtrA family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49163.54 Da        Isoelectric Point: 7.1548

>NTDB_id=1020482 ABU615_RS01115 WP_370389024.1 245835..247214(+) (radA) [Snodgrassella alvi strain Acer08]
MAKQKTQFQCRSCGGQSPKWQGRCPHCGEWNTLEETIVLPAASGNSRFQSWASGQSAVQLLAEVSAVEVQRTPTGMNELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAEEESVLYVSGEESAQQVALRAQRLGIQADRVHLLAEIRVEAISAA
IARLNPKVKVVVIDSIQTMYSDSITSAPGSVSQVRECAAQLTRLAKQQGISMLLVGHVTKDGAIAGPRVLEHMVDTVLYF
EGETHSNYRMIRAIKNRFGAANELGVFAMTEKGLKGVSNPSALFLSSYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHG
FAPKRLTVGLAQERLAMLLAVLNRHAGIACYDQDVFLNAVGGVKITEPAADLAVILAMLSSHRNRPLPEKLIVFGEVGLS
GEIRPVPRGQERLREAEKLGFTHAIVPVANCPKRAADFPGLTIIGVNSVQEGVDASRRN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1020482 ABU615_RS01115 WP_370389024.1 245835..247214(+) (radA) [Snodgrassella alvi strain Acer08]
ATGGCAAAACAAAAAACTCAGTTTCAATGTCGCAGTTGCGGTGGTCAATCGCCAAAATGGCAAGGTCGTTGTCCGCACTG
TGGTGAATGGAATACGCTAGAAGAAACGATAGTTCTGCCTGCTGCTAGTGGCAATAGCCGCTTTCAATCATGGGCCTCTG
GTCAGTCTGCAGTACAGTTACTGGCAGAGGTAAGCGCAGTGGAAGTCCAGCGTACGCCTACTGGTATGAATGAGCTTGAT
AGGGTACTTGGCGGAGGTCTGGTGGATGGTGCTGTTATTTTGCTGGGTGGAGATCCCGGCATAGGTAAATCTACTTTACT
GTTGCAAACAATTGCTTTAATGGCTGAAGAAGAGTCAGTACTGTATGTTTCCGGTGAAGAATCTGCGCAACAGGTGGCTT
TACGGGCTCAACGACTTGGTATCCAAGCGGATAGGGTGCACTTACTGGCAGAAATCCGTGTTGAGGCCATAAGCGCTGCT
ATAGCACGTCTGAATCCCAAAGTAAAAGTAGTAGTAATTGATTCAATTCAAACCATGTATTCTGACAGCATTACTTCTGC
ACCTGGATCTGTTTCTCAGGTACGCGAATGTGCCGCTCAGCTAACCAGATTAGCTAAGCAGCAAGGCATCAGTATGCTGC
TGGTAGGACATGTTACTAAGGATGGTGCAATAGCCGGTCCACGTGTTTTAGAACATATGGTGGATACGGTTTTGTATTTT
GAGGGTGAAACTCACTCTAATTATCGCATGATTCGTGCGATTAAGAATCGTTTTGGTGCTGCCAATGAGTTAGGCGTATT
TGCTATGACTGAAAAAGGGCTCAAAGGGGTATCTAATCCATCTGCTTTGTTTCTATCCAGCTACCGTGATGATGTTCCCG
GCTCCTGTGTGCTGGTTACTCAGGAAGGGTCACGCCCATTGCTGGTGGAAATTCAGGCATTGGTAGATGATGCGCATGGT
TTTGCGCCAAAACGTTTAACGGTGGGACTAGCACAGGAGCGGCTGGCAATGCTGCTGGCTGTGCTTAATCGTCATGCAGG
TATTGCTTGCTATGATCAGGATGTGTTTCTAAATGCGGTTGGTGGTGTAAAAATTACCGAACCGGCTGCTGATTTGGCTG
TAATACTGGCTATGTTATCAAGCCATCGTAACCGTCCGTTGCCGGAAAAGCTGATTGTATTTGGCGAGGTGGGCTTATCC
GGAGAGATTCGTCCTGTGCCTCGTGGCCAGGAGCGTTTACGAGAGGCAGAAAAACTGGGGTTTACTCATGCAATTGTGCC
GGTAGCCAATTGTCCGAAACGAGCAGCAGATTTTCCAGGGTTAACGATTATTGGAGTCAATTCGGTACAGGAAGGAGTGG
ATGCCAGCCGGCGCAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.032

100

0.497
  radA Streptococcus pneumoniae Rx1

48.026

99.346

0.477
  radA Streptococcus pneumoniae D39

48.026

99.346

0.477
  radA Streptococcus pneumoniae R6

48.026

99.346

0.477
  radA Streptococcus pneumoniae TIGR4

48.026

99.346

0.477
  radA Streptococcus mitis SK321

48.337

98.257

0.475
  radA Streptococcus mitis NCTC 12261

48.115

98.257

0.473

Multiple sequence alignment