Detailed information NTG1020492

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABU615_RS06680
• Genome accession: NZ_CP160328
• Coordinates: 1462876..1464150 (-)
• Length: 424 a.a.
• NCBI ID: WP_370388726.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1457876..1469150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU615_RS06670 (ABU615_15050)	-	1459542..1461221 (+)	1680	WP_370388724.1	McrB family protein	-
ABU615_RS06675 (ABU615_15055)	-	1461227..1462357 (+)	1131	WP_370388725.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
ABU615_RS06680 (ABU615_05915)	pilA	1462876..1464150 (-)	1275	WP_370388726.1	signal recognition particle-docking protein FtsY	Machinery gene
ABU615_RS06685 (ABU615_05910)	-	1464558..1465106 (-)	549	WP_370388727.1	5'-3'-deoxyribonucleotidase	-
ABU615_RS06690 (ABU615_05905)	ruvA	1465148..1465726 (-)	579	WP_100151497.1	Holliday junction branch migration protein RuvA	-
ABU615_RS06695 (ABU615_05900)	-	1465805..1466500 (-)	696	WP_323811353.1	septal ring lytic transglycosylase RlpA family protein	-
ABU615_RS06700 (ABU615_05890)	-	1466878..1467588 (-)	711	WP_367490282.1	ComF family protein	-
ABU615_RS06705 (ABU615_05885)	bioH	1467587..1468339 (+)	753	WP_267390949.1	pimeloyl-ACP methyl ester esterase BioH	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45379.36 Da
• Isoelectric Point: 4.5683

>NTDB_id=1020492 ABU615_RS06680 WP_370388726.1 1462876..1464150(-) (pilA) [Snodgrassella alvi strain Acer08]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEEHTANAAISESTATETTEDIIVPAAVDEP
AAIATSTESEVVQAPASENTIVIPVDTTETPSETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPADKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GESIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1020492 ABU615_RS06680 WP_370388726.1 1462876..1464150(-) (pilA) [Snodgrassella alvi strain Acer08]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCTCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACTCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAGAGCACA
CAGCGAATGCAGCCATCTCCGAATCTACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCTGCCGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAGGTTGTTCAGGCTCCGGCCAGCGAAAACACCATCGTGATTCCTGTAGATAC
CACAGAAACCCCTAGCGAAACAGACAAACCAGCACGACTAGGCTGGGCAGCACGTCTCAAACAGGGCCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTGGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTATGAAGAGCTGGAAACA
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGTCAGCGCGTTACTCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGCAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCCTTGT
CCATACCTGCTGATAAAAAACCTTTTGTTATCATGATGGCTGGCGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTCTTGGCCGCAGGTGACACATTCCGCGCAGCTGCGCGCGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCCGTCTGCTTCGATG
CCCTTGAAGCAGCCAAAGCACGTGGTATCGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAACGCTATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCTTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCGGTACGTTTCATCGGTGTA
GGCGAAAGCATCGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (221-420)

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.858	100	0.649