Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABU615_RS01505 Genome accession   NZ_CP160328
Coordinates   307693..308166 (+) Length   157 a.a.
NCBI ID   WP_367488214.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 302693..313166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS01480 (ABU615_12925) - 302966..303199 (-) 234 WP_267390327.1 hypothetical protein -
  ABU615_RS01485 (ABU615_12920) - 303304..304020 (+) 717 WP_267390328.1 helix-turn-helix transcriptional regulator -
  ABU615_RS01490 (ABU615_14185) - 304137..305177 (+) 1041 WP_370389063.1 nucleoid-associated protein -
  ABU615_RS01495 (ABU615_12905) - 305222..306688 (+) 1467 WP_367488220.1 hypothetical protein -
  ABU615_RS01500 (ABU615_12900) - 307091..307579 (-) 489 WP_367488218.1 hypothetical protein -
  ABU615_RS01505 (ABU615_12895) ssb 307693..308166 (+) 474 WP_367488214.1 single-stranded DNA-binding protein Machinery gene
  ABU615_RS01510 (ABU615_12890) - 308282..308497 (+) 216 WP_367488212.1 hypothetical protein -
  ABU615_RS01515 (ABU615_12885) - 308494..308844 (+) 351 WP_367488209.1 hypothetical protein -
  ABU615_RS01520 (ABU615_12880) - 308866..309243 (+) 378 WP_370389064.1 hypothetical protein -
  ABU615_RS01525 (ABU615_12870) - 309315..310457 (+) 1143 WP_370389065.1 DUF2800 domain-containing protein -
  ABU615_RS01530 (ABU615_14190) - 310479..311039 (+) 561 WP_370389066.1 DUF2815 family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17379.30 Da        Isoelectric Point: 8.4491

>NTDB_id=1020483 ABU615_RS01505 WP_367488214.1 307693..308166(+) (ssb) [Snodgrassella alvi strain Acer08]
MSVNKVILIGRLGQVPETRRTGTGDAVTNFSLATDEQWKDKNGQKQTRTEWHNITMFGKLGEIASQYLRKGDQVFIEGQI
RSSKYSTKDGVERTAYNIIAAEMRMLGGRNTGTSDSKSGKESDNTLVTSSENAKKSAKQQHQPNPPAVDDIDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1020483 ABU615_RS01505 WP_367488214.1 307693..308166(+) (ssb) [Snodgrassella alvi strain Acer08]
ATGTCAGTCAATAAGGTCATTTTGATTGGCCGTTTGGGCCAAGTACCTGAAACACGACGTACGGGTACAGGAGATGCTGT
AACTAATTTTTCTCTTGCTACTGATGAACAATGGAAAGATAAAAACGGGCAAAAGCAGACTCGTACCGAATGGCACAACA
TTACGATGTTTGGTAAGTTAGGTGAGATTGCCAGTCAGTATCTGCGTAAGGGTGATCAGGTTTTTATTGAAGGGCAGATA
CGAAGTTCTAAATACAGTACTAAAGATGGGGTTGAGCGAACAGCATATAACATTATTGCTGCTGAAATGAGGATGTTAGG
CGGGCGCAATACCGGTACGTCAGATAGCAAAAGCGGTAAAGAGAGTGATAATACACTTGTTACCTCTTCAGAAAACGCTA
AAAAGTCTGCTAAGCAGCAACATCAACCTAATCCACCTGCAGTTGATGATATAGATGATGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

52.247

100

0.592
  ssb Neisseria meningitidis MC58

50

100

0.554
  ssb Vibrio cholerae strain A1552

41.143

100

0.459
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.395

Multiple sequence alignment