Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABU615_RS10080 Genome accession   NZ_CP160328
Coordinates   2264363..2264836 (-) Length   157 a.a.
NCBI ID   WP_367428384.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2259363..2269836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS10060 (ABU615_01185) lpdA 2259713..2261467 (+) 1755 WP_370388949.1 dihydrolipoyl dehydrogenase -
  ABU615_RS10065 (ABU615_01180) - 2261728..2262846 (+) 1119 WP_370389361.1 AI-2E family transporter -
  ABU615_RS10070 (ABU615_01175) rpsT 2262976..2263242 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABU615_RS10075 (ABU615_15690) - 2263275..2264228 (+) 954 WP_267390074.1 bile acid:sodium symporter family protein -
  ABU615_RS10080 (ABU615_01160) recX 2264363..2264836 (-) 474 WP_367428384.1 recombination regulator RecX Regulator
  ABU615_RS10085 (ABU615_01155) - 2264833..2265540 (-) 708 WP_100139940.1 phosphoglycolate phosphatase -
  ABU615_RS10090 (ABU615_01150) - 2265693..2266763 (-) 1071 WP_367430785.1 aldose epimerase family protein -
  ABU615_RS10095 (ABU615_01145) - 2266750..2268063 (-) 1314 WP_100139942.1 replication-associated recombination protein A -
  ABU615_RS10100 (ABU615_01140) - 2268228..2268575 (+) 348 WP_267390078.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 18484.11 Da        Isoelectric Point: 9.2160

>NTDB_id=1020503 ABU615_RS10080 WP_367428384.1 2264363..2264836(-) (recX) [Snodgrassella alvi strain Acer08]
MKPKISLRGRAIAILARQEISRAELTRKLRPHVEENDDIESLLDELAERHWQSDARYAETYINSKSRIHGNLRLQQSLKQ
KGVKAELIADYLPDKAEQISNAVAVLQKKYRRPPSDLKEKHKYMHFLAYRGFSMDIINTAMHRAWEESILPEEEFWE

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1020503 ABU615_RS10080 WP_367428384.1 2264363..2264836(-) (recX) [Snodgrassella alvi strain Acer08]
ATGAAACCAAAAATCAGCTTACGCGGCCGTGCCATTGCTATATTGGCACGGCAAGAAATCAGCCGTGCTGAGCTGACTCG
TAAATTACGCCCGCATGTAGAAGAAAACGATGATATTGAATCTTTGCTAGATGAACTAGCCGAGCGGCACTGGCAATCTG
ATGCTCGCTATGCGGAAACCTACATCAACAGTAAAAGCCGTATACACGGCAATCTGCGATTACAGCAAAGCCTTAAACAA
AAAGGAGTTAAAGCGGAGCTGATTGCCGATTATCTGCCAGACAAAGCGGAACAAATCAGTAATGCAGTCGCTGTTTTACA
AAAAAAATATCGCCGGCCTCCATCTGATTTAAAAGAAAAGCACAAATATATGCATTTTCTAGCCTATCGTGGATTTAGCA
TGGATATTATCAATACAGCTATGCATCGTGCTTGGGAAGAGAGTATTCTTCCAGAGGAAGAGTTTTGGGAATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(31-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

53.378

94.268

0.503

Multiple sequence alignment