Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABU615_RS07820 Genome accession   NZ_CP160328
Coordinates   1750902..1752134 (-) Length   410 a.a.
NCBI ID   WP_100156468.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1745902..1757134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS07785 (ABU615_04225) - 1746448..1746696 (-) 249 WP_367489788.1 BolA family protein -
  ABU615_RS07790 (ABU615_04220) - 1746753..1747508 (-) 756 WP_100140882.1 ABC transporter permease -
  ABU615_RS07795 (ABU615_04215) - 1747511..1748428 (-) 918 WP_100140842.1 ABC transporter ATP-binding protein -
  ABU615_RS07800 (ABU615_04210) yacG 1748478..1748675 (-) 198 WP_267392005.1 DNA gyrase inhibitor YacG -
  ABU615_RS07805 (ABU615_04205) zapD 1748675..1749427 (-) 753 WP_100140881.1 cell division protein ZapD -
  ABU615_RS07810 (ABU615_04200) coaE 1749433..1750047 (-) 615 WP_267392006.1 dephospho-CoA kinase -
  ABU615_RS07815 (ABU615_04195) pilD 1750044..1750895 (-) 852 WP_367417839.1 A24 family peptidase Machinery gene
  ABU615_RS07820 (ABU615_04190) pilG 1750902..1752134 (-) 1233 WP_100156468.1 type II secretion system F family protein Machinery gene
  ABU615_RS07825 (ABU615_04185) pilF 1752181..1753860 (-) 1680 WP_267408994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABU615_RS07830 (ABU615_04180) recJ 1754060..1755757 (-) 1698 WP_370386594.1 single-stranded-DNA-specific exonuclease RecJ -
  ABU615_RS07835 (ABU615_04175) - 1755754..1756728 (-) 975 WP_370388790.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45158.33 Da        Isoelectric Point: 9.9541

>NTDB_id=1020495 ABU615_RS07820 WP_100156468.1 1750902..1752134(-) (pilG) [Snodgrassella alvi strain Acer08]
MNKPVAVSKAKSTGISYSFEGKNIKTEQIVRGEVVAKDEAEARAKLNRRQIRVIQINKVKKQRQKKISPADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQMLMQIRSDVEQGTSLADSFAKYPKYFDRFYCNLVRAGETGGVLEAILDKLAVY
KEKTQGIKKKVKSALTYPVVVVVVAIALVIVMMMFVLPSFGKVYEGMGVPLPGLTQFMMNISNFFVHFGVFIIIALIAGV
IGLIKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWARTTATLFAAGVPLVEVLDSVAGAAGNIKYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKSAEFYEEDVDTAVSQLSSLMEPIIMVVLGLIVGVILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1020495 ABU615_RS07820 WP_100156468.1 1750902..1752134(-) (pilG) [Snodgrassella alvi strain Acer08]
ATGAACAAACCAGTAGCAGTATCCAAAGCTAAATCTACCGGCATCAGCTACAGCTTTGAAGGAAAAAACATCAAAACTGA
GCAGATTGTACGCGGCGAAGTAGTAGCAAAAGATGAGGCAGAAGCCCGTGCCAAACTTAACCGAAGACAGATTCGTGTCA
TTCAGATTAACAAAGTCAAAAAACAGCGTCAGAAAAAAATCAGTCCGGCGGATATAACAGTCTTTACTCGACAATTATCA
ACCATGATGAAATCCGGTTTACCGATGATGCAGGCTTTTGATATCGCAGCCAAAGGCCACTCAAACCCTGCTATGACCCA
AATGCTGATGCAAATCCGTTCTGATGTTGAGCAGGGTACATCATTAGCTGATTCTTTTGCCAAATATCCAAAGTATTTTG
ATCGATTTTATTGCAATCTGGTACGTGCAGGCGAAACAGGCGGTGTATTGGAAGCCATATTAGATAAACTGGCCGTATAC
AAAGAAAAAACTCAAGGAATTAAGAAAAAGGTTAAAAGTGCTTTGACCTATCCGGTAGTAGTGGTAGTTGTCGCAATTGC
TCTGGTAATCGTCATGATGATGTTCGTTTTACCATCATTCGGTAAAGTTTACGAAGGCATGGGCGTTCCTCTGCCAGGGC
TTACACAATTCATGATGAATATTTCTAATTTCTTTGTCCACTTTGGTGTATTTATTATCATTGCACTCATTGCAGGTGTA
ATTGGACTAATAAAATGGTATCAGAACTCAGATGATTTGAAAAAACGTTTTGATTATATGTTATTGAAGATGCCCATTTT
TGGACAGATCGTACGTAAAGCCACAATTGCCCGCTGGGCGCGCACAACAGCAACCTTGTTTGCTGCCGGCGTACCCTTAG
TAGAAGTACTTGACTCAGTTGCCGGAGCAGCGGGCAATATCAAATATGAAGAAGCGACACAGGAAATTCGGGCCAAGGTT
AATCAGGGTATCTCCCTCACCTCTGCCATGCAGGCTACTGAATTATTTCCCAATATGGTGATGCAAATGGCCTCTATTGG
CGAAGAATCCGGATCACTTGATGATATGTTAAATAAATCAGCCGAATTTTATGAAGAAGACGTAGATACTGCTGTTTCAC
AGCTATCCTCTTTGATGGAACCCATTATCATGGTAGTACTCGGTTTGATCGTCGGTGTTATTCTGGTTGCTATGTATTTA
CCACTCTTCAACATCGGTAATGCAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.394

95.854

0.627
  pilG Neisseria meningitidis 44/76-A

64.631

95.854

0.62
  pilC Legionella pneumophila strain ERS1305867

47

97.561

0.459
  pilC Acinetobacter baumannii D1279779

43.609

97.317

0.424
  pilC Acinetobacter baylyi ADP1

42.965

97.073

0.417
  pilC Pseudomonas stutzeri DSM 10701

41.604

97.317

0.405
  pilC Vibrio cholerae strain A1552

38.557

98.049

0.378

Multiple sequence alignment