Detailed information NTG1020494

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABU615_RS07815
• Genome accession: NZ_CP160328
• Coordinates: 1750044..1750895 (-)
• Length: 283 a.a.
• NCBI ID: WP_367417839.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1745044..1755895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU615_RS07780 (ABU615_04230)	murA	1745148..1746404 (-)	1257	WP_370388789.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABU615_RS07785 (ABU615_04225)	-	1746448..1746696 (-)	249	WP_367489788.1	BolA family protein	-
ABU615_RS07790 (ABU615_04220)	-	1746753..1747508 (-)	756	WP_100140882.1	ABC transporter permease	-
ABU615_RS07795 (ABU615_04215)	-	1747511..1748428 (-)	918	WP_100140842.1	ABC transporter ATP-binding protein	-
ABU615_RS07800 (ABU615_04210)	yacG	1748478..1748675 (-)	198	WP_267392005.1	DNA gyrase inhibitor YacG	-
ABU615_RS07805 (ABU615_04205)	zapD	1748675..1749427 (-)	753	WP_100140881.1	cell division protein ZapD	-
ABU615_RS07810 (ABU615_04200)	coaE	1749433..1750047 (-)	615	WP_267392006.1	dephospho-CoA kinase	-
ABU615_RS07815 (ABU615_04195)	pilD	1750044..1750895 (-)	852	WP_367417839.1	A24 family peptidase	Machinery gene
ABU615_RS07820 (ABU615_04190)	pilG	1750902..1752134 (-)	1233	WP_100156468.1	type II secretion system F family protein	Machinery gene
ABU615_RS07825 (ABU615_04185)	pilF	1752181..1753860 (-)	1680	WP_267408994.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABU615_RS07830 (ABU615_04180)	recJ	1754060..1755757 (-)	1698	WP_370386594.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31181.17 Da
• Isoelectric Point: 7.9571

>NTDB_id=1020494 ABU615_RS07815 WP_367417839.1 1750044..1750895(-) (pilD) [Snodgrassella alvi strain Acer08]
MLSDTLFFSIIALITGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFARFNLCVPPSACPHCQHKIRWWQNIPL
ISYLILHGRCAACAKPISPRYFCVELLTGLAFAAVVWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFDA

Nucleotide

• Length: 852 bp

>NTDB_id=1020494 ABU615_RS07815 WP_367417839.1 1750044..1750895(-) (pilD) [Snodgrassella alvi strain Acer08]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATAACAGGTTTAGCTGTAGGCAGCTTTCTAAACGTAGTCAT
CTACCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAACTTTG
CCCGTTTCAATCTTTGCGTACCCCCGTCAGCCTGCCCTCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGCTATCTTATCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTTGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAGTATGGCGCTATGATGTAACACCAGTTGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTACCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTGCCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCGATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.019	95.053	0.523
pilD	Acinetobacter baumannii D1279779	52.03	95.76	0.498
pilD	Acinetobacter nosocomialis M2	51.661	95.76	0.495
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445