Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABU615_RS03760 Genome accession   NZ_CP160328
Coordinates   834038..834487 (-) Length   149 a.a.
NCBI ID   WP_323811348.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 829038..839487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU615_RS03745 (ABU615_09785) - 829140..829592 (-) 453 WP_323811347.1 pilin -
  ABU615_RS03750 (ABU615_14625) - 830427..831857 (-) 1431 WP_370389246.1 sulfatase-like hydrolase/transferase -
  ABU615_RS03755 (ABU615_14630) - 832419..833849 (-) 1431 WP_370389247.1 sulfatase-like hydrolase/transferase -
  ABU615_RS03760 (ABU615_09760) pilA 834038..834487 (-) 450 WP_323811348.1 pilin Machinery gene
  ABU615_RS03765 (ABU615_09755) - 834901..835350 (-) 450 WP_323811380.1 pilin -
  ABU615_RS03770 (ABU615_14635) - 835600..836403 (-) 804 WP_370388209.1 hypothetical protein -
  ABU615_RS03775 (ABU615_09735) - 836777..838999 (+) 2223 WP_370389248.1 FepA family TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15581.01 Da        Isoelectric Point: 9.3024

>NTDB_id=1020487 ABU615_RS03760 WP_323811348.1 834038..834487(-) (pilA) [Snodgrassella alvi strain Acer08]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIVDNMQNNTCDSNNKAIDEQKGKYGTA
KIAGSVTMTSATSAMGDTGCTILYTVNSTGVSAAIKGKKLELSVLKNGSLKKSAAGTDMDEKYIPKAYL

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1020487 ABU615_RS03760 WP_323811348.1 834038..834487(-) (pilA) [Snodgrassella alvi strain Acer08]
ATGAAAGCATTCCAAAAAGGTTTTACATTAATCGAATTGATGATTGTTATTGCGATTATTGGTATTTTGGCAGCCATCGC
TGTACCTGCTTATTCTGACTATATCGCGCGCTCTCAAGCATCTGAAGCGTCTAGTCTGGCTGCCGGTTTGAAAACACAGA
TAGTAGATAACATGCAAAATAATACCTGTGATTCAAATAATAAAGCTATAGATGAGCAAAAAGGTAAATATGGTACTGCA
AAAATTGCAGGATCCGTAACAATGACCTCAGCTACTTCAGCCATGGGTGATACAGGTTGTACAATTCTGTATACTGTAAA
TAGTACCGGTGTTTCTGCTGCTATTAAAGGTAAAAAATTAGAATTGTCTGTGTTGAAAAATGGTTCATTAAAGAAATCAG
CAGCCGGTACAGATATGGATGAAAAATATATACCTAAAGCTTATTTATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

48.322

100

0.483
  pilE Neisseria gonorrhoeae MS11

38.462

100

0.436
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40

100

0.416
  pilE Neisseria gonorrhoeae strain FA1090

42.029

92.617

0.389
  pilA Pseudomonas aeruginosa PAK

37.013

100

0.383
  comP Acinetobacter baylyi ADP1

37.333

100

0.376
  pilA2 Legionella pneumophila str. Paris

38.194

96.644

0.369
  pilA2 Legionella pneumophila strain ERS1305867

37.5

96.644

0.362

Multiple sequence alignment