MGE detailed information
MGE type: Conjugative plasmid MGE length: 99159 bp
Accession: NC_002483 Location: 1..99159 Organism: Escherichia coli K-12 Replicon: plasmid F
Accession: NC_002483 Location: 1..99159 Organism: Escherichia coli K-12 Replicon: plasmid F
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXF02_RS00010 (D616_p97046) | 66..1228 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| HXF02_RS00015 | 1259..1426 | + | 168 | Protein_1 | ProQ/FINO family protein | - |
| HXF02_RS00020 | 1561..1749 | + | 189 | WP_001345829.1 | hypothetical protein | - |
| HXF02_RS00515 | 1947..2033 | + | 87 | Protein_3 | endonuclease | - |
| HXF02_RS00025 | 2214..2531 | - | 318 | WP_250911031.1 | hypothetical protein | - |
| HXF02_RS00030 (D616_p97087) | 2926..3075 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| HXF02_RS00035 (D616_p97095) | 3359..3616 | + | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| HXF02_RS00040 (D616_p97091) | 3850..3924 | + | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| HXF02_RS00535 | 3962..4084 | - | 123 | WP_289845690.1 | hypothetical protein | - |
| HXF02_RS00045 (D616_p97081) | 4303..6399 | - | 2097 | WP_000422420.1 | hypothetical protein | - |
| HXF02_RS00050 (D616_p97083) | 6415..6966 | - | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HXF02_RS00055 (D616_p97084) | 7130..10138 | + | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| HXF02_RS00060 (D616_p97044) | 10729..11790 | - | 1062 | WP_001092154.1 | EAL domain-containing protein | - |
| HXF02_RS00065 (D616_p97043) | 11900..12265 | - | 366 | WP_052319267.1 | hypothetical protein | - |
| HXF02_RS00070 (D616_p97042) | 12477..12872 | - | 396 | WP_000491615.1 | polymer-forming cytoskeletal protein | - |
| HXF02_RS00075 (D616_p97041) | 13047..13409 | - | 363 | WP_250911032.1 | hypothetical protein | - |
| HXF02_RS00080 (D616_p97040) | 13453..14055 | - | 603 | WP_000271587.1 | hypothetical protein | - |
| HXF02_RS00085 | 14063..14251 | - | 189 | WP_000131420.1 | hypothetical protein | - |
| HXF02_RS00090 | 14926..15060 | + | 135 | Protein_18 | IS3 family transposase | - |
| HXF02_RS00095 (D616_p97038) | 15158..16320 | + | 1163 | WP_085955200.1 | IS3 family transposase ISEc17 | Transposase |
| HXF02_RS00100 | 16376..17662 | + | 1287 | Protein_20 | IS66 family transposase | - |
| HXF02_RS00110 | 18993..19142 | + | 150 | Protein_22 | IS66 family transposase IS679 | Transposase |
| HXF02_RS00115 | 19203..19556 | + | 354 | Protein_23 | IS3 family transposase | - |
| HXF02_RS00120 (D616_p97031) | 20096..20728 | - | 633 | WP_250911033.1 | hypothetical protein | - |
| HXF02_RS00125 | 20895..21089 | - | 195 | WP_176453471.1 | hypothetical protein | - |
| HXF02_RS00130 (D616_p97030) | 21222..21494 | - | 273 | WP_000560319.1 | hypothetical protein | - |
| HXF02_RS00520 | 21541..26850 | - | 5310 | WP_040078930.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| HXF02_RS00140 (D616_p97027) | 27486..31673 | - | 4188 | WP_225390950.1 | hypothetical protein | VF |
| HXF02_RS00145 (D616_p97100) | 32322..33269 | + | 948 | WP_001193612.1 | Outer membrane protease OmpP | VF |
| HXF02_RS00150 (D616_p97026) | 33374..34861 | + | 1488 | WP_072145210.1 | alpha/beta hydrolase | - |
| HXF02_RS00525 | 35363..35497 | + | 135 | Protein_31 | serine/threonine protein kinase | - |
| HXF02_RS00160 (D616_p97101) | 35618..36358 | + | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| HXF02_RS00165 (D616_p97094) | 36643..37620 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| HXF02_RS00170 (D616_p97023) | 38460..39101 | - | 642 | WP_000990665.1 | hypothetical protein | - |
| HXF02_RS00175 | 40140..40307 | - | 168 | WP_000218294.1 | hypothetical protein | - |
| HXF02_RS00180 (D616_p97020) | 41216..41506 | + | 291 | WP_000538310.1 | hypothetical protein | - |
| HXF02_RS00185 (D616_p97019) | 41496..42395 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| HXF02_RS00190 (D616_p97099) | 42445..44670 | - | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| HXF02_RS00195 (D616_p97093) | 44672..45760 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| HXF02_RS00200 (D616_p97106) | 46340..46558 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HXF02_RS00205 (D616_p97105) | 46560..46865 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HXF02_RS00210 (D616_p97090) | 46866..47672 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| HXF02_RS00215 (D616_p97092) | 48446..49201 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| HXF02_RS00220 (D616_p97089) | 49789..50955 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| HXF02_RS00225 (D616_p97088) | 50955..51926 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HXF02_RS00230 | 52879..53780 | + | 902 | Protein_46 | DUF1281 domain-containing protein | - |
| HXF02_RS00235 (D616_p97015) | 53784..54089 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| HXF02_RS00240 (D616_p97014) | 54166..54849 | + | 684 | WP_000085939.1 | DNA methylase | - |
| HXF02_RS00245 (D616_p97013) | 54850..55071 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| HXF02_RS00250 (D616_p97012) | 54965..55519 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| HXF02_RS00255 (D616_p97011) | 55565..56341 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| HXF02_RS00260 (D616_p97009) | 56755..57180 | + | 426 | WP_001198920.1 | antirestriction protein | - |
| HXF02_RS00265 (D616_p97008) | 57227..57649 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| HXF02_RS00270 | 57646..57837 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| HXF02_RS00275 | 57807..58163 | - | 357 | WP_000388237.1 | hypothetical protein | - |
| HXF02_RS00280 (D616_p97085) | 58643..59182 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| HXF02_RS00285 (D616_p97006) | 59239..59472 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| HXF02_RS00290 (D616_p97005) | 59538..61496 | + | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| HXF02_RS00295 (D616_p97097) | 61551..61985 | + | 435 | WP_010892539.1 | conjugation system SOS inhibitor PsiB | - |
| HXF02_RS00300 (D616_p97098) | 61982..62744 | + | 763 | Protein_60 | plasmid SOS inhibition protein A | - |
| - | 62713..62911 | - | 199 | - | - | Antitoxin Detail |
| HXF02_RS00530 | 62918..63067 | + | 150 | Protein_61 | DUF5431 family protein | - |
| HXF02_RS00305 (D616_p97103) | 63009..63134 | + | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HXF02_RS00310 (D616_p97004) | 63435..63732 | - | 298 | Protein_63 | hypothetical protein | - |
| HXF02_RS00320 (D616_p97003) | 64032..64319 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| HXF02_RS00325 (D616_p97002) | 64438..65259 | + | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| HXF02_RS00330 (D616_p97001) | 65556..66158 | - | 603 | WP_000243701.1 | hypothetical protein | VF |
| HXF02_RS00335 (D616_p97066) | 66479..66862 | + | 384 | WP_001151527.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| HXF02_RS00340 (D616_p97072) | 67049..67738 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| HXF02_RS00345 (D616_p97057) | 67831..68232 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| HXF02_RS00350 (D616_p97080) | 68265..68630 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| HXF02_RS00355 (D616_p97069) | 68645..68956 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HXF02_RS00360 (D616_p97074) | 68978..69544 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HXF02_RS00365 (D616_p97071) | 69531..70259 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| HXF02_RS00370 (D616_p97076) | 70259..71686 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HXF02_RS00375 (D616_p97064) | 71676..72266 | + | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| HXF02_RS00380 (D616_p97051) | 72259..72450 | + | 192 | WP_001345835.1 | conjugal transfer protein TrbD | - |
| HXF02_RS00385 (D616_p97049) | 72462..72713 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| HXF02_RS00390 (D616_p97059) | 72710..73225 | + | 516 | WP_010892541.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HXF02_RS00395 (D616_p97062) | 73360..73581 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| HXF02_RS00400 (D616_p97075) | 73741..76368 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| HXF02_RS00405 (D616_p97048) | 76365..76751 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| HXF02_RS00410 (D616_p97058) | 76748..77380 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HXF02_RS00415 (D616_p97061) | 77377..78369 | + | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| HXF02_RS00420 (D616_p97053) | 78378..79016 | + | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HXF02_RS00425 (D616_p97065) | 79013..80821 | + | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HXF02_RS00430 (D616_p97050) | 80848..81105 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| HXF02_RS00435 (D616_p97073) | 81098..81841 | + | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HXF02_RS00440 (D616_p97055) | 81857..82204 | + | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| HXF02_RS00445 (D616_p97107) | 82206..82520 | - | 315 | WP_000415566.1 | protein ArtA | - |
| HXF02_RS00450 (D616_p97070) | 82601..82885 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HXF02_RS00455 (D616_p97060) | 82872..83417 | + | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HXF02_RS00460 (D616_p97052) | 83347..83688 | + | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| HXF02_RS00465 (D616_p97056) | 83675..84055 | + | 381 | WP_001366201.1 | F-type conjugal transfer protein TrbF | - |
| HXF02_RS00470 (D616_p97078) | 84055..85428 | + | 1374 | WP_021553026.1 | conjugal transfer pilus assembly protein TraH | - |
| HXF02_RS00475 (D616_p97079) | 85425..88241 | + | 2817 | WP_001007055.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| HXF02_RS00480 (D616_p97068) | 88274..88795 | + | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| HXF02_RS00485 (D616_p97067) | 88820..89551 | + | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| HXF02_RS00490 (D616_p97082) | 89804..91957 | + | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| HXF02_RS00495 | 91966..92364 | - | 399 | WP_000911324.1 | type II toxin-antitoxin system VapC family toxin | - |
| HXF02_RS00500 | 92364..92591 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | - |
| HXF02_RS00505 (D616_p97077) | 92673..97943 | + | 5271 | WP_000987005.1 | Multifunctional conjugation protein TraI | Relaxase |
| HXF02_RS00510 (D616_p97063) | 97963..98709 | + | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| HXF02_RS00005 (D616_p97104) | 98764..99156 | + | 393 | Protein_103 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli strain NBRC 3301 | Conjugative plasmid | TA149484, TA149486, TA149487, TA149491 | NZ_CP048440 | 1..98786 | 0 | |
| Escherichia coli strain Stbl4 | Conjugative plasmid | TA204603, TA204604 | NZ_CP076044 | 1..98268 | 0 | |
| Escherichia coli strain EMG2 | Conjugative plasmid | TA249157, TA249158, TA249159, TA249162 | NZ_CP099589 | 1..99158 | 0 |