Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00071  |
| T6SS type | Type i3 |
| Strain | Burkholderia mallei ATCC 23344 |
| Replicon (RefSeq) | chromosome II (NC_006349) |
| Location | 2076057..2104654 |
| Function | - |
| Comment | - |
| References | [1] Schell MA et al (2007) Type VI secretion is a major virulence determinant in Burkholderia mallei. Mol Microbiol. 64(6):1466-85. [PudMed:17555434] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssI | TssJ | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Loading, please wait
Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BMA_RS24985 | 2071093..2071485 | - | 393 | WP_004196232.1 | helix-turn-helix domain-containing protein | ||
| BMA_RS24990 | 2071559..2072335 | - | 777 | WP_004187753.1 | NAD(P)H-dependent oxidoreductase | ||
| BMA_RS24995 | 2072431..2073324 | + | 894 | WP_004187634.1 | LysR family transcriptional regulator | ||
| BMA_RS25000 | 2073664..2075580 | + | 1917 | WP_004187822.1 | SMP-30/gluconolactonase/LRE family protein | ||
| BMA_RS25005 | 2076300..2076680 | - | 381 | WP_004200686.1 | DUF4150 domain-containing protein | ||
| BMA_RS25010 | 2076721..2077380 | - | 660 | WP_004187892.1 | DUF3540 domain-containing protein | ||
| BMA_RS25020 | 2077562..2078644 | - | 1083 | WP_004196236.1 | pentapeptide repeat-containing protein | ||
| BMA_RS25025 | 2078641..2081118 | - | 2478 | WP_004188576.1 | DUF2169 domain-containing protein | ||
| T6CP008463 | TssI | BMA_RS25030 (tssI) | 2081150..2083477 | - | 2328 | WP_004188373.1 | type VI secretion system tip protein VgrG |
| T6CP000604 | TssA | BMA_RS25035 | 2083549..2084652 | - | 1104 | WP_004196241.1 | type VI secretion system ImpA family N-terminal domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
Loading, please wait
Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||