Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00071 insolico
T6SS type Type i3
Strain Burkholderia mallei ATCC 23344
Replicon (RefSeq) chromosome II (NC_006349)
Location 2076057..2104654
Function -
Comment -
References
[1] Schell MA et al (2007) Type VI secretion is a major virulence determinant in Burkholderia mallei. Mol Microbiol. 64(6):1466-85. [PudMed:17555434]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentTagJTssATssBTssCTssDTssETssFTssITssJTssKTssL
Number11111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
BMA_RS24985 2071093..2071485 - 393 WP_004196232.1 helix-turn-helix domain-containing protein
BMA_RS24990 2071559..2072335 - 777 WP_004187753.1 NAD(P)H-dependent oxidoreductase
BMA_RS24995 2072431..2073324 + 894 WP_004187634.1 LysR family transcriptional regulator
BMA_RS25000 2073664..2075580 + 1917 WP_004187822.1 SMP-30/gluconolactonase/LRE family protein
BMA_RS25005 2076300..2076680 - 381 WP_004200686.1 DUF4150 domain-containing protein
BMA_RS25010 2076721..2077380 - 660 WP_004187892.1 DUF3540 domain-containing protein
BMA_RS25020 2077562..2078644 - 1083 WP_004196236.1 pentapeptide repeat-containing protein
BMA_RS25025 2078641..2081118 - 2478 WP_004188576.1 DUF2169 domain-containing protein
T6CP008463 TssI BMA_RS25030 (tssI) 2081150..2083477 - 2328 WP_004188373.1 type VI secretion system tip protein VgrG
T6CP000604 TssA BMA_RS25035 2083549..2084652 - 1104 WP_004196241.1 type VI secretion system ImpA family N-terminal domain-containing protein
BMA_RS25040 (tssG) 2084649..2085733 - 1085 pseudogene type VI secretion system baseplate subunit TssG
T6CP000605 TssF BMA_RS25045 (tssF) 2085733..2087622 - 1890 WP_004187986.1 type VI secretion system baseplate subunit TssF
T6CP000606 TssE BMA_RS25050 (tssE) 2087653..2088234 - 582 WP_004187068.1 type VI secretion system baseplate subunit TssE
T6CP012710 TagJ BMA_RS25055 2088221..2089186 - 966 WP_004187921.1 ImpE/SciE family protein
BMA_RS25060 2089183..2089929 - 747 WP_004188539.1 TagK domain-containing protein
BMA_RS25065 (tssH) 2090435..2093358 + 2924 pseudogene type VI secretion system ATPase TssH
T6CP000607 TssB BMA_RS25070 (tssB) 2093394..2093975 + 582 WP_004196243.1 type VI secretion system contractile sheath small subunit
T6CP000608 TssC BMA_RS25075 (tssC) 2094010..2095509 + 1500 WP_004188012.1 type VI secretion system contractile sheath large subunit
T6CP000609 TssD BMA_RS25080 2095626..2096111 + 486 WP_004188308.1 type VI secretion system tube protein Hcp
T6CP000610 TssJ BMA_RS25085 (tssJ) 2096218..2096721 + 504 WP_004187276.1 type VI secretion system lipoprotein TssJ
T6CP000611 TssK BMA_RS25090 (tssK) 2096743..2098089 + 1347 WP_004188743.1 type VI secretion system baseplate subunit TssK
T6CP000612 TssL BMA_RS25095 (tssL) 2098178..2099443 + 1266 WP_004188530.1 type VI secretion system protein TssL, long form
BMA_RS25100 (tssM) 2099472..2103547 + 4076 pseudogene type VI secretion system membrane subunit TssM
BMA_RS25105 2103567..2103797 + 231 WP_004188288.1 hypothetical protein
BMA_RS25110 2104383..2105729 + 1347 WP_004196246.1 LysR family transcriptional regulator
BMA_RS25115 2105972..2106898 - 927 WP_004187006.1 catecholic dioxygenase
BMA_RS25120 2106953..2107924 - 972 WP_004187502.1 quinone oxidoreductase
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector