Detailed information of component protein


Summary

Component ID T6CP000611
Component protein type TssK
T6SS ID (Type) T6SS00071 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS25090
Coordinate (Strand) 2096743..2098089 (+)
NCBI ID WP_004188743.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 8.9e-139 20..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MSWHNKVVWSEGLFMRPQLFQQQERYLEHYAHKRAAPLSPFFFGFSHFSLDSEAPALGKIIVKSASGVFADGTPFDAPGSTPPPAPLTIRPEHLDQVIYLAVPIRVPNGEETAFDRAAESLARYAVFETDLRDTNSIGQGPKTVQLSNLRLRLLPEKELTDAWIGLALTRVKTIRADASIELDDMLIPPVVGYGASDTLASWLAKIHDLTRLRANALAERLTGSDGRASTTAEVSDYLLLQTLNRYEPLLKHLQRVPTTSPAELYALLIGMAGELSTYVRTDTRRPLDTHPPYQHVAPHLCLKPVVDDTHRLLNAVLVRSAQRLALADLGHGMLNAVVDPVDMQGFTAVVLAVHAQMPPDLLQQQFAAQAKAGPSERLPDLVRSHLSGIALQALPVPPRQIPFNAGYVYYELARGGPLWDEVARHGGLALHIAGEFPSLKLELWGIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9900 - -


  Protein sequence: 449 a.a.    

>T6CP000611 NC_006349:2096743-2098089 [Burkholderia mallei ATCC 23344] [TssK]
MSWHNKVVWSEGLFMRPQLFQQQERYLEHYAHKRAAPLSPFFFGFSHFSLDSEAPALGKIIVKSASGVFADGTPFDAPGS
TPPPAPLTIRPEHLDQVIYLAVPIRVPNGEETAFDRAAESLARYAVFETDLRDTNSIGQGPKTVQLSNLRLRLLPEKELT
DAWIGLALTRVKTIRADASIELDDMLIPPVVGYGASDTLASWLAKIHDLTRLRANALAERLTGSDGRASTTAEVSDYLLL
QTLNRYEPLLKHLQRVPTTSPAELYALLIGMAGELSTYVRTDTRRPLDTHPPYQHVAPHLCLKPVVDDTHRLLNAVLVRS
AQRLALADLGHGMLNAVVDPVDMQGFTAVVLAVHAQMPPDLLQQQFAAQAKAGPSERLPDLVRSHLSGIALQALPVPPRQ
IPFNAGYVYYELARGGPLWDEVARHGGLALHIAGEFPSLKLELWGIRG*

  Nucleotide sequence: 1347 bp    

>T6CP000611 NC_006349:2096743-2098089 [Burkholderia mallei ATCC 23344] [TssK]
ATGAGCTGGCATAACAAGGTCGTCTGGAGCGAGGGGCTTTTCATGCGCCCGCAGCTGTTCCAGCAGCAGGAGCGCTATCT
CGAGCACTACGCGCACAAGCGCGCGGCGCCGCTGTCGCCGTTCTTCTTCGGCTTCAGCCACTTCAGCCTCGACAGCGAGG
CGCCGGCGCTCGGCAAGATCATCGTGAAATCGGCGAGCGGCGTGTTCGCCGACGGCACGCCGTTCGACGCGCCGGGCAGC
ACGCCGCCGCCCGCGCCGCTCACGATCCGGCCCGAGCATCTGGACCAGGTGATCTACCTCGCGGTGCCGATCCGCGTGCC
GAACGGCGAGGAAACCGCATTCGACCGCGCGGCCGAATCGCTCGCGCGCTATGCCGTGTTCGAAACCGACCTGCGCGACA
CGAACTCGATCGGGCAAGGGCCGAAGACGGTCCAGTTGTCGAACCTGCGCCTGCGGCTGCTTCCGGAAAAGGAACTGACG
GACGCGTGGATCGGGCTCGCGCTCACGCGCGTGAAGACGATTCGCGCGGACGCGAGCATCGAGCTCGACGACATGCTGAT
TCCGCCCGTGGTCGGCTACGGCGCGAGCGACACGCTCGCGAGCTGGCTCGCGAAGATCCACGATCTCACGCGCCTGCGCG
CGAACGCGCTCGCCGAGCGCCTGACGGGCTCGGACGGCCGGGCGAGCACGACGGCCGAAGTATCCGACTACCTGCTGCTG
CAAACGCTCAATCGCTACGAGCCGCTGCTGAAACACCTGCAGCGCGTGCCCACGACGTCGCCCGCCGAGCTGTACGCGCT
GCTCATCGGCATGGCGGGCGAGCTGTCCACCTACGTGCGCACCGATACGCGCCGGCCGCTCGATACGCACCCGCCCTATC
AGCACGTCGCGCCGCATCTGTGCCTGAAGCCCGTCGTCGACGACACGCACCGGCTGCTCAACGCCGTGCTCGTGCGCAGC
GCGCAGCGCCTCGCGCTCGCCGATCTGGGGCACGGAATGCTCAACGCGGTCGTCGATCCGGTCGACATGCAGGGCTTCAC
CGCGGTCGTGCTCGCGGTGCATGCGCAGATGCCGCCCGATCTGCTGCAGCAGCAGTTCGCCGCGCAGGCGAAGGCGGGGC
CGTCCGAGCGGCTGCCGGACCTCGTGCGCAGCCATCTGTCCGGCATCGCGCTGCAGGCGCTGCCGGTGCCGCCCCGACAG
ATCCCGTTCAACGCCGGCTACGTCTATTACGAGCTCGCGCGCGGCGGGCCGCTGTGGGACGAAGTCGCGCGGCACGGCGG
GCTCGCGCTGCACATCGCCGGCGAATTTCCGTCGCTGAAGCTCGAGCTATGGGGCATTCGCGGATAG