Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00069  |
| T6SS type | Type i3 |
| Strain | Burkholderia mallei ATCC 23344 |
| Replicon (RefSeq) | chromosome II (NC_006349) |
| Location | 429068..465354 |
| Function | - |
| Comment | - |
| References | [1] Schell MA et al (2007) Type VI secretion is a major virulence determinant in Burkholderia mallei. Mol Microbiol. 64(6):1466-85. [PudMed:17555434] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BMA_RS18145 | 425119..426153 | + | 1035 | WP_004190433.1 | lipase secretion chaperone | ||
| BMA_RS18150 | 426255..427784 | - | 1530 | WP_004200631.1 | PLP-dependent aminotransferase family protein | ||
| BMA_RS18155 | 427893..428993 | + | 1101 | WP_004190757.1 | ABC transporter ATP-binding protein | ||
| BMA_RS18160 | 429068..430114 | + | 1047 | WP_004190781.1 | ABC transporter substrate-binding protein | ||
| BMA_RS18165 | 430215..431474 | + | 1260 | WP_004196172.1 | ABC transporter permease | ||
| BMA_RS18170 | 431505..432331 | + | 827 | pseudogene | ABC transporter permease | ||
| BMA_RS18175 | 432426..432857 | - | 432 | pseudogene | peptidase S53 | ||
| BMA_RS18180 | 432906..434026 | - | 1121 | WP_038802950.1 | IS3 family transposase | ||
| T6CP005062 | TssB | BMA_RS18185 (tssB) | 434096..434563 | + | 468 | pseudogene | type VI secretion system contractile sheath small subunit |
| T6CP005063 | TssC | BMA_RS18190 (tssC) | 434566..436071 | + | 1506 | WP_004190846.1 | type VI secretion system contractile sheath large subunit |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||