Detailed information of component protein


Summary

Component ID T6CP005064
Component protein type TssD
T6SS ID (Type) T6SS00069 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (176 a.a.); Nucleotide sequence (528 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) BMA_RS18195
Coordinate (Strand) 436215..436742 (+)
NCBI ID WP_004196178.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 7.4e-38 9..150

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-175 MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGEHIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMGAVIKAGYDLKQNAPI



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9890 - -



  Protein sequence: 176 a.a.    

>T6CP005064 NC_006349:436215-436742 [Burkholderia mallei ATCC 23344] [TssD]
MANALVDYFLQIDGVEGESTDQQYPGLIQIQSWQWAEENSGRWGFGSGGGAGKVEMKDFEFRMVSNKASPKLFLMCATGE
HIQNAKLICRKSGKGQQEFLTISFASGLVSSFRTLGNMPISQLGHASGEVDGVLPTDQIRINFVQIEFEYREQRNDGTMG
AVIKAGYDLKQNAPI*

  Nucleotide sequence: 528 bp    

>T6CP005064 NC_006349:436215-436742 [Burkholderia mallei ATCC 23344] [TssD]
ATGGCAAATGCTTTGGTTGATTACTTCTTGCAGATCGATGGCGTCGAGGGTGAGTCGACCGATCAGCAATATCCCGGTCT
GATCCAGATCCAGAGCTGGCAGTGGGCGGAAGAGAACTCGGGCCGCTGGGGCTTCGGCAGCGGCGGCGGCGCGGGCAAGG
TCGAGATGAAGGACTTCGAGTTCCGCATGGTGTCGAACAAGGCGTCGCCGAAGCTGTTCCTGATGTGCGCGACGGGTGAG
CACATCCAGAATGCGAAGCTGATCTGCCGCAAGTCGGGCAAGGGCCAGCAGGAGTTCCTGACGATCTCGTTCGCGAGCGG
CCTCGTGTCGTCGTTCCGCACGCTCGGCAACATGCCGATCTCGCAGCTCGGTCACGCGAGCGGCGAAGTCGACGGCGTGC
TGCCGACGGATCAGATCCGCATCAACTTCGTCCAGATCGAGTTCGAGTACCGCGAGCAGCGCAACGACGGCACGATGGGC
GCCGTGATCAAGGCGGGCTACGACCTGAAGCAGAACGCGCCGATCTAA