Detailed information of component protein


Summary

Component ID T6CP005068
Component protein type TssI
T6SS ID (Type) T6SS00069 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (763 a.a.); Nucleotide sequence (2289 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS18225
Coordinate (Strand) 445391..447679 (+)
NCBI ID WP_004190563.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.7e-77 23..327
Phage_base_V PF04717.14 1.1e-13 380..449
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-762 MRLIELRSPLLDPDAVALSFVVHENLSQEPSYQLDLLSHDSNLDFDALLGSTLSADIDLGEGDIRTFNTHVFGGYDTGQMSGQYTYTLELRSWLSFLAENRNSRIFQDLSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEGIYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSKQLDSDAQVEQQSLGGIPLEYYDYAAGYRDPEQGERLARLRLEAIQADAHALGGEANARALAVGRAFTLVGHPALSRNRRYYVTNSELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLVTKRPRVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTTEADASCWIRVTQAWAGKGWGVLAMPRVGQEVIVVYVDGDLDRPLATGIVYNGENPTPYDLPKDIRYTGLVTRSIKRAGGIPNASQLTFDDQHGAERVMIHAERDLQQTVERNSSTSIAQDLNLSVKGTSTSVVGISVSFTGISVSYTGLSVSFTGVSARFTGVSTSFTGVSTSFTGVSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSSWKDVSMSTTGQSESITGVSLSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSVSTTGSSMSATGSSVGTTGSSVSTTGSKMSVTGFSFSYTGASYEDVGVDLKKLGMQTKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9899 - -


  Protein sequence: 763 a.a.    

>T6CP005068 NC_006349:445391-447679 [Burkholderia mallei ATCC 23344] [TssI]
MRLIELRSPLLDPDAVALSFVVHENLSQEPSYQLDLLSHDSNLDFDALLGSTLSADIDLGEGDIRTFNTHVFGGYDTGQM
SGQYTYTLELRSWLSFLAENRNSRIFQDLSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEG
IYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSKQLDS
DAQVEQQSLGGIPLEYYDYAAGYRDPEQGERLARLRLEAIQADAHALGGEANARALAVGRAFTLVGHPALSRNRRYYVTN
SELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLVTKRPRVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTTE
ADASCWIRVTQAWAGKGWGVLAMPRVGQEVIVVYVDGDLDRPLATGIVYNGENPTPYDLPKDIRYTGLVTRSIKRAGGIP
NASQLTFDDQHGAERVMIHAERDLQQTVERNSSTSIAQDLNLSVKGTSTSVVGISVSFTGISVSYTGLSVSFTGVSARFT
GVSTSFTGVSTSFTGVSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSSWKDVS
MSTTGQSESITGVSLSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSVSTTGSSMSATGSSVGT
TGSSVSTTGSKMSVTGFSFSYTGASYEDVGVDLKKLGMQTKN*

  Nucleotide sequence: 2289 bp    

>T6CP005068 NC_006349:445391-447679 [Burkholderia mallei ATCC 23344] [TssI]
ATGCGTCTGATCGAACTGCGCAGTCCCCTGCTGGACCCGGACGCCGTCGCGCTGAGCTTCGTGGTGCATGAGAACCTGTC
GCAGGAGCCGTCGTATCAGCTCGATCTGCTGAGCCACGATTCGAATCTGGACTTCGACGCGCTGCTCGGCTCGACGCTGT
CGGCCGACATCGACCTGGGCGAAGGCGACATCCGGACGTTCAACACGCACGTGTTCGGCGGCTACGACACGGGGCAGATG
AGCGGGCAATACACGTACACGCTGGAGCTGCGAAGCTGGTTGTCGTTTCTCGCGGAGAACCGCAACAGCCGGATCTTCCA
GGATTTGAGCGTGCCGCAGATCGTCGAGCAGGTGTTCCAGGGCCATCAGCGCAACGGCTACCGGTTCGAGCTCGAAGGCA
CGTACGAGCCGCGCGAGTACTGCGTGCAGTTTCAGGAAACGGATCTGAACTTCGTGAAGCGGCTGCTGGAGGACGAAGGG
ATCTACTTCTGGGTGGAGCACGAGCCGGACCGTCATGTGGTGGTGATCTCGGACACGCAGCGGTTCGAGGATCTGCCGCT
GCCGAACGACACGCTGGAGTATTTGCCGGACGGCGAGGAGTCGCGCGCGATCCAGGGGCGCGAAGGGGTGCAGCGGCTGC
AGCGCACGCGGCGGATCAAGTCGAACAACGTCGCGCTGCGGGATTTCGACTATCACGCGCCGTCGAAGCAACTGGACAGC
GACGCGCAGGTCGAGCAACAGAGCCTCGGCGGCATTCCGCTCGAGTACTACGACTACGCGGCCGGCTACCGCGACCCCGA
GCAGGGCGAGCGCCTCGCGCGGCTGCGGCTCGAAGCGATTCAGGCTGATGCACACGCGCTCGGGGGCGAGGCGAACGCAC
GCGCGCTGGCGGTGGGTCGCGCGTTCACGCTGGTCGGCCATCCGGCGCTGAGCCGCAATCGTCGGTACTACGTGACGAAC
AGCGAGCTGACGTTCATCCAGGACGGACCGGACAGCACGTCGCAGGGGCGCAACGTCGCGGTGAAGTTCCGCGCGCTCGC
CGACGATCAGCCGTTTCGGCCGCTGCTTGTCACCAAGCGGCCGCGCGTGCCGGGCATCCAGAGCGCGACGGTGGTGGGCC
CGGAGATGTCGGAGGTGCATACCGACAAGCTCGGGCGGATTCGCGTGCACTTCCACTGGGACCGCTACAAGACGACCGAG
GCGGACGCGTCGTGCTGGATTCGCGTGACGCAGGCATGGGCGGGCAAGGGCTGGGGCGTGCTCGCGATGCCGCGGGTCGG
GCAGGAAGTCATCGTCGTGTATGTCGACGGCGATCTCGACCGGCCGCTCGCGACGGGCATCGTCTACAACGGCGAAAACC
CGACGCCTTATGACCTGCCGAAGGATATCCGCTACACGGGCCTCGTCACACGCTCGATCAAGCGGGCGGGCGGCATTCCG
AATGCGAGCCAACTGACGTTCGACGATCAGCACGGCGCGGAGCGCGTGATGATCCACGCGGAGCGCGACTTGCAGCAGAC
GGTCGAGCGCAACAGCTCGACGTCGATCGCGCAGGATCTGAACCTGTCGGTGAAGGGCACGTCGACGTCGGTCGTCGGCA
TCTCGGTCAGCTTCACGGGCATCTCGGTGTCGTACACGGGGTTGTCGGTGAGCTTCACCGGCGTGTCGGCGAGGTTCACG
GGCGTGAGCACGTCGTTTACCGGCGTGAGCACGAGTTTCACCGGCGTGTCGACGTCGTTTACCGGCGTCGATACCAGCTT
CACTGGCGTCTCGACCGGATTCAAGGGCGTCGACACGAGCTTCACCGGCGTCGCGACGTCGATGGTGGGCGTGTCGACGA
GCATCACGGGCTCCAGCAATTCCGTGACGGGCGTGTCGAACAGCATGACGGGCATCTCGTCTTCCTGGAAGGACGTGAGC
ATGTCGACGACCGGCCAGTCCGAAAGCATCACGGGAGTATCGCTGTCGTACACGGGCACGTCGAACAGCATGACGGGCAC
GAGCACGTCGGTGACGGGCACCTCGACGAGCATCACCGGCACGTCGATGTCGAACACCGGCAGCTCGACGAGCATCACGG
GCACATCGATGTCGACGACGGGCAGCTCGGTGAGCACGACGGGCTCGAGCATGTCGGCCACCGGCAGTTCGGTGGGCACG
ACGGGCTCGAGCGTATCGACGACGGGAAGCAAGATGTCGGTCACCGGCTTCAGCTTCTCGTATACGGGAGCGAGCTACGA
GGATGTGGGCGTCGATCTGAAAAAGCTCGGGATGCAGACGAAGAACTGA