Detailed information of component protein


Summary

Component ID T6CP005067
Component protein type TssI
T6SS ID (Type) T6SS00069 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (749 a.a.); Nucleotide sequence (2247 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS18220
Coordinate (Strand) 442979..445225 (+)
NCBI ID WP_004196185.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3e-77 23..328
Phage_base_V PF04717.14 1.8e-14 381..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-748 MRLIELRSPLLDPDAVALSFVVHESLSQEPSYQLDLLSHDPDLDFDALFGSTLSADIDLGEGDIRTFNTHVFGGYDTGQMSGQYTYTLELRSWLSFLAENRNSRIFQNMSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEGIYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSNKLDSDAQQVSPPNLEGIPLEYYDYAAGYREPEQGERLARLRLEAIQAESHTLVGEANARALATGRAFTLIGHPALGRNRRYYVTNSELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLTTPRPEVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTTEADASCWIRVSQAWAGKGWGVIAMPRVGQEVLVTYVDGDLDRPLVTGIVYNGENPTPYDLPKDIRYTGLVSRSIKRAGGYQNASQITFDDQRGAERVMIHAERDMQQTVERNSSTSVVGISISFTGISVSYTGLSVSFTGVSASFTGVSTSFTGVSTSFTGVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNSMTGISSSWTDVSMSTTGQSQSITGVSLSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSTSVTGSSVSTTDSSVSTTGSSVSTTGSSVSTTGFSFSYTGVSYSDTGIDLKKVGMQVKS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9829 - -


  Protein sequence: 749 a.a.    

>T6CP005067 NC_006349:442979-445225 [Burkholderia mallei ATCC 23344] [TssI]
MRLIELRSPLLDPDAVALSFVVHESLSQEPSYQLDLLSHDPDLDFDALFGSTLSADIDLGEGDIRTFNTHVFGGYDTGQM
SGQYTYTLELRSWLSFLAENRNSRIFQNMSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEG
IYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSNKLDS
DAQQVSPPNLEGIPLEYYDYAAGYREPEQGERLARLRLEAIQAESHTLVGEANARALATGRAFTLIGHPALGRNRRYYVT
NSELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLTTPRPEVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTT
EADASCWIRVSQAWAGKGWGVIAMPRVGQEVLVTYVDGDLDRPLVTGIVYNGENPTPYDLPKDIRYTGLVSRSIKRAGGY
QNASQITFDDQRGAERVMIHAERDMQQTVERNSSTSVVGISISFTGISVSYTGLSVSFTGVSASFTGVSTSFTGVSTSFT
GVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNSMTGISSSWTDVSMSTTGQSQSITGVS
LSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSTSVTGSSVSTTDSSVSTTGSSVSTTGSSVST
TGFSFSYTGVSYSDTGIDLKKVGMQVKS*

  Nucleotide sequence: 2247 bp    

>T6CP005067 NC_006349:442979-445225 [Burkholderia mallei ATCC 23344] [TssI]
ATGCGTCTGATCGAACTGCGCAGTCCCCTGCTGGACCCGGATGCGGTGGCGCTGAGCTTCGTGGTGCACGAGAGCTTGTC
GCAGGAGCCGTCGTATCAACTGGATCTGCTGAGCCACGACCCGGATCTGGACTTCGACGCGCTGTTCGGCTCGACGCTGT
CGGCCGACATCGACCTGGGCGAAGGCGACATCCGGACGTTCAACACGCACGTGTTCGGCGGCTACGACACGGGGCAGATG
AGCGGGCAATACACGTACACGCTGGAGCTGCGAAGCTGGCTGTCGTTTCTCGCGGAGAACCGCAACAGCCGGATCTTCCA
GAACATGAGCGTGCCGCAGATCGTCGAGCAGGTGTTCCAGGGCCATCAGCGCAACGGCTACCGGTTCGAGCTCGAAGGTA
CGTACGAGCCGCGCGAGTACTGCGTGCAGTTTCAGGAAACGGATCTGAACTTCGTGAAGCGGCTGCTGGAGGACGAAGGG
ATCTACTTCTGGGTGGAGCACGAGCCGGATCGTCATGTGGTGGTGATCTCGGACACGCAGCGGTTCGAGGATCTGCCGCT
GCCGAACGACACGCTGGAGTATCTGCCGGACGGCGAGGAGTCGCGCGCGATCCAGGGGCGCGAAGGGGTGCAGCGGCTGC
AGCGCACGCGGCGGATCAAGTCGAACAACGTCGCGCTGCGGGATTTCGACTATCACGCGCCGTCGAACAAGCTCGACAGC
GACGCGCAGCAGGTGTCGCCGCCGAACCTCGAGGGGATTCCGCTCGAGTATTACGACTATGCGGCGGGCTACCGCGAGCC
CGAGCAGGGCGAGCGTCTCGCGCGGCTGCGGCTCGAGGCGATTCAGGCGGAATCACACACGCTGGTGGGCGAGGCGAACG
CGCGCGCGCTGGCCACGGGCCGGGCGTTCACGTTGATCGGGCATCCGGCGCTGGGGCGCAATCGTCGGTACTACGTGACG
AACAGCGAGCTGACGTTCATCCAGGACGGACCGGACAGCACGTCGCAGGGGCGCAACGTCGCGGTGAAGTTCCGCGCGCT
TGCCGACGATCAGCCGTTTCGGCCGCTGTTGACGACGCCGCGTCCCGAAGTGCCGGGTATCCAGAGCGCGACGGTGGTGG
GTCCGGAGATGTCGGAAGTGCATACCGACAAGCTCGGGCGGATTCGCGTGCATTTCCATTGGGACCGCTACAAGACGACC
GAGGCGGATGCGTCGTGCTGGATACGCGTGTCGCAGGCATGGGCGGGCAAGGGCTGGGGCGTGATCGCGATGCCGCGGGT
CGGGCAGGAAGTGCTCGTCACGTATGTCGACGGCGATCTCGATCGGCCGCTCGTGACGGGCATCGTCTACAACGGCGAGA
ACCCGACGCCTTATGACTTGCCGAAGGACATCCGCTACACGGGGCTGGTGTCGCGTTCGATCAAGCGTGCGGGCGGTTAT
CAGAACGCGAGTCAGATCACGTTCGATGACCAGCGCGGCGCGGAGCGCGTGATGATCCACGCGGAGCGCGACATGCAGCA
GACGGTCGAGCGCAACAGCTCGACGTCGGTCGTCGGCATCTCGATTAGCTTCACGGGCATCTCGGTGTCGTACACGGGGT
TGTCGGTGAGCTTCACCGGCGTGTCGGCGAGCTTCACGGGCGTGAGCACGTCGTTTACCGGCGTGAGCACGAGTTTCACC
GGCGTGTCGACGTCGTTTACCGGCGTCGACACCGGCTTCAAGGGCGTGTCGACGTCGTTTACCGGTGTCGATACCAGCTT
CAAGGGTGTGTCGACTTCGTTCACGGGCGTAAGCACGAGCCTCACCGGTTCGAGCAACTCGGTGACGGGCGTATCGAACA
GCATGACGGGCATCTCGTCATCATGGACCGACGTCAGCATGTCGACGACCGGCCAATCCCAAAGCATCACGGGGGTATCG
CTGTCGTACACGGGCACGTCGAACAGCATGACGGGCACGAGCACGTCGGTGACGGGCACCTCGACGAGCATCACCGGCAC
GTCGATGTCGAACACCGGCAGCTCGACGAGCATCACGGGCACGTCGATGTCGACGACGGGCAGCTCGACGAGCGTCACCG
GCTCGAGCGTATCGACGACCGACAGCTCGGTGAGCACGACGGGCTCGAGCGTGTCGACAACGGGCAGCAGCGTGTCGACG
ACGGGTTTCAGCTTCTCGTACACCGGCGTCAGCTATTCGGACACCGGTATCGACCTGAAGAAGGTCGGCATGCAAGTGAA
GAGCTGA