Detailed information of component protein


Summary

Component ID T6CP005063
Component protein type TssC
T6SS ID (Type) T6SS00069 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (502 a.a.); Nucleotide sequence (1506 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS18190
Coordinate (Strand) 434566..436071 (+)
NCBI ID WP_004190846.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.1e-127 69..371
VipB_2 PF18945.2 1.4e-43 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-501 MQQLESSAEKVVVDQNNVNEDLKDILRRSFRPRTNEAAEAVQNAVETLLTYARRSRVVVREDVAQTIEQLVAELDKKISEQLTLVLHNKRFQSLEGAWRGLHYLVSNTDTSENLKIRYLNISKADLGKTLRRFKGVVWDQSPIFKMIYEQEYGQFGGEPFGCLIGDFYFDHSMQDVSILTEMSKISAAAHAPFIAAAAPGLLQMDDWSELSNPRDVSKIFTATEYAFWRRLRESNDSRYLALTLPRFLARVPYGPKTQPVEEFGFEEKVDPNRAEDFCWANSAYAMGANITRAFKTYGWCTKIRGVESGGAVEVLPKFVLPSQDREVDLHCPTEIAISDRREHELSESGLMPLVYRKNSDTAAFIGAKTVHRPAIYEDDDATANSNLSSRLPYIFATCRFAHYLKCIVRDKIGSFKSAEDTQRWLNDWLMNYVDGDPSISSEVTKSQRPLSAAEVVVDEIPENPGYYRAQFFLRPHFQLEGLTVSLRLVSKLPSTKHEVTT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence: 502 a.a.    

>T6CP005063 NC_006349:434566-436071 [Burkholderia mallei ATCC 23344] [TssC]
MQQLESSAEKVVVDQNNVNEDLKDILRRSFRPRTNEAAEAVQNAVETLLTYARRSRVVVREDVAQTIEQLVAELDKKISE
QLTLVLHNKRFQSLEGAWRGLHYLVSNTDTSENLKIRYLNISKADLGKTLRRFKGVVWDQSPIFKMIYEQEYGQFGGEPF
GCLIGDFYFDHSMQDVSILTEMSKISAAAHAPFIAAAAPGLLQMDDWSELSNPRDVSKIFTATEYAFWRRLRESNDSRYL
ALTLPRFLARVPYGPKTQPVEEFGFEEKVDPNRAEDFCWANSAYAMGANITRAFKTYGWCTKIRGVESGGAVEVLPKFVL
PSQDREVDLHCPTEIAISDRREHELSESGLMPLVYRKNSDTAAFIGAKTVHRPAIYEDDDATANSNLSSRLPYIFATCRF
AHYLKCIVRDKIGSFKSAEDTQRWLNDWLMNYVDGDPSISSEVTKSQRPLSAAEVVVDEIPENPGYYRAQFFLRPHFQLE
GLTVSLRLVSKLPSTKHEVTT*

  Nucleotide sequence: 1506 bp    

>T6CP005063 NC_006349:434566-436071 [Burkholderia mallei ATCC 23344] [TssC]
ATGCAGCAGCTTGAATCGTCTGCCGAGAAGGTGGTCGTCGATCAGAACAACGTCAACGAGGATCTGAAGGACATCCTGCG
CCGCTCGTTCCGGCCGCGCACCAACGAGGCGGCCGAGGCGGTGCAGAACGCGGTCGAGACGCTGCTCACGTATGCGCGGC
GCAGCCGGGTCGTGGTTCGTGAGGATGTCGCGCAGACGATCGAGCAGCTGGTTGCCGAGCTCGACAAGAAGATCTCCGAG
CAACTGACGCTCGTGCTGCACAACAAGCGCTTTCAGAGCCTCGAAGGCGCGTGGCGCGGATTGCACTACCTCGTGTCGAA
CACCGATACGAGCGAGAACCTGAAGATCCGCTACCTGAACATCTCGAAAGCGGATCTCGGCAAGACGCTGCGGCGCTTCA
AGGGCGTCGTGTGGGATCAGAGTCCGATTTTCAAGATGATCTACGAGCAGGAGTACGGCCAGTTCGGCGGCGAGCCGTTC
GGCTGCCTGATCGGCGACTTCTATTTCGACCACAGCATGCAGGACGTGTCGATCCTCACCGAGATGTCGAAGATCTCGGC
GGCCGCTCACGCGCCGTTCATCGCGGCTGCCGCGCCCGGCCTGCTGCAGATGGACGACTGGAGCGAGCTGTCGAACCCGC
GCGACGTGTCGAAGATCTTCACGGCGACCGAGTATGCGTTCTGGCGGCGCCTGCGCGAGAGCAACGACTCGCGCTACCTC
GCGCTCACGCTGCCGCGCTTCCTCGCGCGTGTGCCGTATGGTCCGAAGACGCAGCCCGTCGAAGAGTTCGGCTTCGAGGA
GAAGGTCGATCCGAACCGCGCGGAGGATTTCTGCTGGGCGAACTCCGCGTATGCGATGGGCGCGAACATCACGCGCGCGT
TCAAGACCTACGGCTGGTGCACGAAGATTCGCGGCGTCGAGTCGGGCGGCGCGGTCGAGGTGCTGCCGAAGTTCGTGCTG
CCGTCGCAGGATCGCGAAGTCGATCTGCATTGCCCGACCGAGATCGCGATCTCGGACCGCCGCGAGCACGAATTGTCCGA
GTCGGGCCTGATGCCGCTCGTGTATCGGAAGAATTCGGATACGGCCGCGTTCATCGGCGCGAAGACCGTGCATCGTCCGG
CGATCTACGAGGACGACGACGCGACCGCGAACTCGAACCTGTCGTCGCGGCTGCCGTACATCTTCGCGACCTGCCGTTTC
GCGCATTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCGTTCAAGTCGGCCGAGGACACGCAGCGCTGGCTCAACGA
CTGGCTGATGAACTACGTGGACGGCGACCCGAGCATCTCGAGCGAGGTGACGAAGTCGCAGCGTCCGCTGTCGGCGGCGG
AGGTGGTCGTCGACGAGATTCCGGAAAACCCCGGCTACTATCGCGCGCAGTTCTTCCTGCGCCCCCATTTCCAACTGGAG
GGTTTGACCGTTTCTCTCCGGCTGGTTTCGAAGCTTCCGTCGACCAAGCACGAGGTGACGACCTGA