Pectobacterium atrosepticum SCRI1043
Experimental investigation has been performed.
Bioinformatics investigation has been performed| T6SS ID | Type | Organism | Replicon (Accession) | Location | Function |
|---|---|---|---|---|---|
| T6SS00040 | i1 | Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 3829218..3869582 | anti-eukaryotic; effector translocation; virulence |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Regulator ID | Locus tag (Gene) | Related T6SS | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|---|
| REG0093 |
ECA_RS00520 (expI) | T6SS00040 |
protein | QS regulatory pathway | Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 125689..126339 (+) | 499404281 | T6SS transcripts (ECA4275[hcp1], ECA3428[hcp2] and ECA2866[hcp3]) (↓) |
| REG0094 |
ECA3435 (bEBP/VasH) | T6SS00040 |
protein | Global regulator | Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 3850745..3852298 (-) | 499407476 | T6SS gene cluster promoter (PECA3445) (↓); Hcp gene cluster promoter (PECA4275) (↓); Hcp gene cluster promoter (PECA2866) (↓) |
| REG0095 |
ECA0288 (rpoN) | T6SS00040 |
protein | Global regulator | Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 336007..337440 (-) | 499404454 | T6SS gene cluster promoter (PECA3445) (↓); Hcp gene cluster promoter (PECA4275) (↓); Hcp gene cluster promoter (PECA2866) (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|---|
| EFF00055 |
ECA_RS21185 | - | - | T6SS00040 |
Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 4790053..4790571 (+) | 50123195 |
| EFF00050 |
ECA_RS02315 | - | - | T6SS00040 |
Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 520562..521041 (-) | 50119407 |
| EFF00051 |
ECA_RS14065 | - | - | T6SS00040 |
Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 3204842..3205360 (+) | 50121790 |
| EFF00053 |
ECA_RS16900 | - | - | T6SS00040 |
Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 3839060..3841096 (-) | 50122351 |
| EFF00054 |
ECA_RS16905 | - | - | T6SS00040 |
Pectobacterium atrosepticum SCRI1043 | chromosome (NC_004547) | 3841279..3841797 (-) | 50122352 |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Immunity protein ID | Locus tag (Gene) | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Cognate effector |
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Experimental investigation has been performed. Bioinformatics investigation has been performed| ID | Locus tag (Gene) | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Response to T6SS attack | Known or putative function |
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Experimental investigation has been performed. Bioinformatics investigation has been performed| Accessory protein ID | Locus tag (Gene) | Related T6SS | Type | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Related structure protein | Related effector |
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