Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | ABFT88_RS05255 | Genome accession | NZ_CP155927 |
| Coordinates | 1258411..1258860 (+) | Length | 149 a.a. |
| NCBI ID | WP_225042506.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. raphani strain bglFP 6767 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1253411..1263860
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFT88_RS05235 (ABFT88_05225) | - | 1253455..1254789 (+) | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| ABFT88_RS05240 (ABFT88_05235) | coaE | 1255339..1255962 (-) | 624 | WP_228876559.1 | dephospho-CoA kinase | - |
| ABFT88_RS05245 (ABFT88_05240) | - | 1255976..1256839 (-) | 864 | WP_228876553.1 | A24 family peptidase | - |
| ABFT88_RS05250 (ABFT88_05245) | pilC | 1256846..1258099 (-) | 1254 | WP_225042505.1 | type II secretion system F family protein | Machinery gene |
| ABFT88_RS05255 (ABFT88_05250) | pilA2 | 1258411..1258860 (+) | 450 | WP_225042506.1 | pilin | Machinery gene |
| ABFT88_RS05260 (ABFT88_05255) | pilB | 1259017..1260750 (+) | 1734 | WP_228957556.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFT88_RS05265 (ABFT88_05260) | pilR | 1261167..1262561 (-) | 1395 | WP_228957555.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 14989.26 Da Isoelectric Point: 9.1351
>NTDB_id=999752 ABFT88_RS05255 WP_225042506.1 1258411..1258860(+) (pilA2) [Xanthomonas campestris pv. raphani strain bglFP 6767]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRAKVSEGIVQASAAKLAVAETASSLNGLANVTAANSGYAFTANST
TNVASIGVGANGVINVVTRNTGATTQPAIRLTPTQADANAPIVWACSLVAGEAKHVPATCRTAAPAAAP
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRAKVSEGIVQASAAKLAVAETASSLNGLANVTAANSGYAFTANST
TNVASIGVGANGVINVVTRNTGATTQPAIRLTPTQADANAPIVWACSLVAGEAKHVPATCRTAAPAAAP
Nucleotide
Download Length: 450 bp
>NTDB_id=999752 ABFT88_RS05255 WP_225042506.1 1258411..1258860(+) (pilA2) [Xanthomonas campestris pv. raphani strain bglFP 6767]
ATGAAAAAGCAGCAAGGTTTTACACTTATCGAACTGATGATCGTGGTGGCGATCATTGCTATCTTGGCGGCTATTGCTCT
GCCGGCTTATCAGGATTACACCATTCGTGCCAAGGTGTCGGAAGGCATCGTGCAGGCGTCGGCTGCTAAGCTGGCCGTGG
CGGAGACAGCATCTTCTTTGAATGGTTTGGCTAACGTGACCGCCGCCAATTCGGGATATGCTTTCACTGCAAACTCGACA
ACCAACGTTGCTAGCATCGGCGTAGGCGCCAATGGCGTTATCAATGTTGTAACGCGTAATACAGGTGCTACTACGCAGCC
GGCCATCCGTTTGACTCCGACTCAGGCGGATGCGAACGCACCGATCGTGTGGGCATGCAGCTTGGTTGCCGGCGAGGCAA
AGCACGTTCCTGCAACTTGCCGTACTGCTGCTCCTGCCGCAGCACCTTAA
ATGAAAAAGCAGCAAGGTTTTACACTTATCGAACTGATGATCGTGGTGGCGATCATTGCTATCTTGGCGGCTATTGCTCT
GCCGGCTTATCAGGATTACACCATTCGTGCCAAGGTGTCGGAAGGCATCGTGCAGGCGTCGGCTGCTAAGCTGGCCGTGG
CGGAGACAGCATCTTCTTTGAATGGTTTGGCTAACGTGACCGCCGCCAATTCGGGATATGCTTTCACTGCAAACTCGACA
ACCAACGTTGCTAGCATCGGCGTAGGCGCCAATGGCGTTATCAATGTTGTAACGCGTAATACAGGTGCTACTACGCAGCC
GGCCATCCGTTTGACTCCGACTCAGGCGGATGCGAACGCACCGATCGTGTGGGCATGCAGCTTGGTTGCCGGCGAGGCAA
AGCACGTTCCTGCAACTTGCCGTACTGCTGCTCCTGCCGCAGCACCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
56.115 |
93.289 |
0.523 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
55.396 |
93.289 |
0.517 |
| comP | Acinetobacter baylyi ADP1 |
44.667 |
100 |
0.45 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40 |
100 |
0.443 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
36.31 |
100 |
0.409 |
| pilE | Neisseria gonorrhoeae MS11 |
37.654 |
100 |
0.409 |
| pilA | Pseudomonas aeruginosa PAK |
35.948 |
100 |
0.369 |
| pilA | Haemophilus influenzae Rd KW20 |
38.732 |
95.302 |
0.369 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.762 |
100 |
0.362 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.571 |
93.96 |
0.362 |