Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFT88_RS05250 Genome accession   NZ_CP155927
Coordinates   1256846..1258099 (-) Length   417 a.a.
NCBI ID   WP_225042505.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain bglFP 6767     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251846..1263099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT88_RS05230 (ABFT88_05220) - 1252785..1253462 (+) 678 WP_003490678.1 response regulator transcription factor -
  ABFT88_RS05235 (ABFT88_05225) - 1253455..1254789 (+) 1335 WP_019237347.1 HAMP domain-containing sensor histidine kinase -
  ABFT88_RS05240 (ABFT88_05235) coaE 1255339..1255962 (-) 624 WP_228876559.1 dephospho-CoA kinase -
  ABFT88_RS05245 (ABFT88_05240) - 1255976..1256839 (-) 864 WP_228876553.1 A24 family peptidase -
  ABFT88_RS05250 (ABFT88_05245) pilC 1256846..1258099 (-) 1254 WP_225042505.1 type II secretion system F family protein Machinery gene
  ABFT88_RS05255 (ABFT88_05250) pilA2 1258411..1258860 (+) 450 WP_225042506.1 pilin Machinery gene
  ABFT88_RS05260 (ABFT88_05255) pilB 1259017..1260750 (+) 1734 WP_228957556.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFT88_RS05265 (ABFT88_05260) pilR 1261167..1262561 (-) 1395 WP_228957555.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45554.80 Da        Isoelectric Point: 10.3670

>NTDB_id=999751 ABFT88_RS05250 WP_225042505.1 1256846..1258099(-) (pilC) [Xanthomonas campestris pv. raphani strain bglFP 6767]
MTAARSTLNKQNSGISAQQFFVWEGTDKRGIKMKGEQSARNVNMLRAELRRQGISPSVVKPKPKPLFGAAGKKITPKDIA
FFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQVRTDIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLETV
LDTIASYKENIEALKGKIRKALFYPAMVVAVALIVSAILLIFVVPQFEQVFKSFGAELPAFTQMIVAASRFMVSYWWIVL
FAVGGTIAGFVFSYKRSPRMQHGMDRLILKIPVIGTIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAV
LRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTVVGG
MVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=999751 ABFT88_RS05250 WP_225042505.1 1256846..1258099(-) (pilC) [Xanthomonas campestris pv. raphani strain bglFP 6767]
ATGACAGCCGCACGCAGCACCCTTAATAAGCAGAATTCAGGGATCAGCGCCCAGCAGTTTTTTGTGTGGGAGGGCACCGA
TAAACGCGGCATCAAGATGAAAGGCGAGCAGTCTGCTCGCAATGTGAACATGCTTCGCGCTGAACTACGCAGACAGGGCA
TATCACCTAGCGTAGTGAAGCCCAAGCCAAAGCCGTTATTTGGAGCTGCAGGCAAAAAGATCACGCCGAAGGACATTGCA
TTCTTCAGCCGCCAAATGGCAACAATGATGAAGTCTGGCGTGCCCATTGTAGGCGCCCTAGAAATTATCGGCGAGGGACA
TAAAAACCCTCGCATGAAAAAAATGGTGGGACAGGTTCGAACAGATATCGAAGGCGGTTCGTCCCTACATGAAGCCATCA
GTAGGCATCCAGTTCAGTTTGACGAGTTGTATCGCAATTTGGTCCGCGCGGGCGAGGGCGCTGGTGTTTTAGAGACGGTA
TTGGACACCATTGCTTCTTATAAAGAAAATATTGAAGCACTCAAAGGCAAGATCAGGAAAGCCCTATTCTATCCTGCAAT
GGTCGTAGCAGTGGCGTTGATAGTTAGCGCCATTCTACTCATTTTTGTTGTTCCGCAATTCGAGCAAGTTTTTAAGAGTT
TTGGTGCAGAACTCCCGGCTTTTACCCAGATGATAGTGGCTGCATCGCGATTCATGGTGAGCTACTGGTGGATTGTGCTT
TTCGCAGTCGGCGGCACAATCGCTGGCTTTGTATTTTCTTATAAACGATCACCTCGTATGCAACACGGTATGGACCGCTT
GATTTTGAAGATCCCTGTGATCGGCACAATCATGCATAACAGTTCAATTGCACGCTTTGCTCGAACTACGGCAGTTACTT
TTAAGGCTGGCGTCCCCCTTGTTGAAGCACTAGGAATTGTCGCTGGGGCCACAGGCAATAAACTATACGAAGAAGCAGTG
TTACGAATGCGCGACGACGTCTCAGTTGGCTACCCAGTCAATATGGCAATGAAACAAGTAAATTTGTTTCCTCACATGGT
CATCCAAATGACCGCAATCGGTGAAGAAGCTGGCGCATTAGATGCAATGCTTTTTAAAGTTGCAGAATATTTCGAACAAG
AAGTTAACAATGCAGTCGATGCACTTAGCAGTCTATTGGAACCTATGATTATGGTGTTCATTGGCACAGTAGTAGGCGGC
ATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.778

94.964

0.501
  pilC Legionella pneumophila strain ERS1305867

52.525

94.964

0.499
  pilC Acinetobacter baylyi ADP1

51.134

95.204

0.487
  pilC Acinetobacter baumannii D1279779

50.126

95.204

0.477
  pilG Neisseria gonorrhoeae MS11

44.31

99.041

0.439
  pilG Neisseria meningitidis 44/76-A

43.826

99.041

0.434
  pilC Vibrio cholerae strain A1552

41.562

95.204

0.396
  pilC Vibrio campbellii strain DS40M4

40.602

95.683

0.388

Multiple sequence alignment