Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABDZ24_RS20115 Genome accession   NZ_CP155623
Coordinates   3824129..3824464 (-) Length   111 a.a.
NCBI ID   WP_000982034.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3819129..3829464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS20090 (ABDZ24_20155) argS 3819149..3820837 (-) 1689 WP_000385005.1 arginine--tRNA ligase -
  ABDZ24_RS20095 (ABDZ24_20160) - 3821138..3821914 (-) 777 WP_000637468.1 class I SAM-dependent methyltransferase -
  ABDZ24_RS20100 (ABDZ24_20165) - 3821964..3822398 (-) 435 WP_000063705.1 BrxA/BrxB family bacilliredoxin -
  ABDZ24_RS20105 (ABDZ24_20170) - 3822482..3822865 (-) 384 WP_346817451.1 DUF393 domain-containing protein -
  ABDZ24_RS20110 (ABDZ24_20175) - 3822869..3823996 (-) 1128 WP_000692567.1 conserved virulence factor C family protein -
  ABDZ24_RS20115 (ABDZ24_20180) ssbA 3824129..3824464 (-) 336 WP_000982034.1 single-stranded DNA-binding protein Machinery gene
  ABDZ24_RS20120 (ABDZ24_20185) - 3824624..3824878 (-) 255 WP_000975144.1 DUF4318 domain-containing protein -
  ABDZ24_RS20125 (ABDZ24_20190) - 3825032..3825763 (-) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  ABDZ24_RS20130 (ABDZ24_20195) - 3825839..3827734 (-) 1896 WP_000783185.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABDZ24_RS20135 (ABDZ24_20200) - 3827731..3828378 (-) 648 WP_000165960.1 HD domain-containing protein -
  ABDZ24_RS20140 (ABDZ24_20205) - 3828488..3829234 (+) 747 WP_346817452.1 hypothetical protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12809.66 Da        Isoelectric Point: 9.0926

>NTDB_id=998138 ABDZ24_RS20115 WP_000982034.1 3824129..3824464(-) (ssbA) [Bacillus paramobilis strain N24509]
MMNRVVLIGRLTKEPELYYTKQSVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR
NYEDDQGKRIYITEVLIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=998138 ABDZ24_RS20115 WP_000982034.1 3824129..3824464(-) (ssbA) [Bacillus paramobilis strain N24509]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAAGTGTGGCTTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAACAAGTGGACTTTATTAATTGTGTCGTTT
GGAGAAAATCAGCTGAGAATGTAACTGAATATTGTACGAAAGGGTCTCTTGTTGGAATTACTGGACGTATTCATACAAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTTCTGATTGAGAGCATTACATTTTTGGAGAGAAGGCG
GGAGGGTGCATCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

95.495

0.514
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.364

99.099

0.459
  ssbB Lactococcus lactis subsp. cremoris KW2

48.571

94.595

0.459
  ssbA Streptococcus mutans UA159

44.545

99.099

0.441
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae Rx1

42.727

99.099

0.423
  ssbB/cilA Streptococcus pneumoniae D39

42.727

99.099

0.423
  ssbB/cilA Streptococcus pneumoniae R6

42.727

99.099

0.423
  ssbB/cilA Streptococcus mitis SK321

42.727

99.099

0.423

Multiple sequence alignment