Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFB52_RS24910 Genome accession   NZ_CP155585
Coordinates   5527611..5528828 (+) Length   405 a.a.
NCBI ID   WP_129972818.1    Uniprot ID   -
Organism   Pseudomonas sp. 9.2(2024)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5522611..5533828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFB52_RS24890 (ABFB52_24890) - 5524141..5524437 (+) 297 WP_085747738.1 DUF2845 domain-containing protein -
  ABFB52_RS24895 (ABFB52_24895) - 5524605..5524961 (-) 357 WP_011335977.1 BON domain-containing protein -
  ABFB52_RS24900 (ABFB52_24900) pilA/pilAI 5525259..5525681 (-) 423 WP_085747737.1 pilin Machinery gene
  ABFB52_RS24905 (ABFB52_24905) pilB 5525908..5527608 (+) 1701 WP_085747736.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFB52_RS24910 (ABFB52_24910) pilC 5527611..5528828 (+) 1218 WP_129972818.1 type II secretion system F family protein Machinery gene
  ABFB52_RS24915 (ABFB52_24915) pilD 5528830..5529702 (+) 873 WP_102686305.1 A24 family peptidase Machinery gene
  ABFB52_RS24920 (ABFB52_24920) coaE 5529699..5530322 (+) 624 WP_007959586.1 dephospho-CoA kinase -
  ABFB52_RS24925 (ABFB52_24925) yacG 5530319..5530519 (+) 201 WP_011335983.1 DNA gyrase inhibitor YacG -
  ABFB52_RS24930 (ABFB52_24930) - 5530526..5530741 (-) 216 WP_129972817.1 hypothetical protein -
  ABFB52_RS24935 (ABFB52_24935) - 5530807..5531496 (-) 690 WP_129972816.1 energy-coupling factor ABC transporter permease -
  ABFB52_RS24940 (ABFB52_24940) - 5531493..5531960 (-) 468 WP_085689765.1 FAD/FMN-containing dehydrogenase -
  ABFB52_RS24945 (ABFB52_24945) - 5532091..5532717 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  ABFB52_RS24950 (ABFB52_24950) - 5532714..5533241 (+) 528 WP_102686306.1 MOSC domain-containing protein -
  ABFB52_RS24955 (ABFB52_24955) - 5533293..5533466 (+) 174 WP_003228304.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44136.82 Da        Isoelectric Point: 10.1093

>NTDB_id=997965 ABFB52_RS24910 WP_129972818.1 5527611..5528828(+) (pilC) [Pseudomonas sp. 9.2(2024)]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALVKAQLRKQGINPGKVRKKSTSLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPSAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGLLVAGFFGTR
HALKKSQAMRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=997965 ABFB52_RS24910 WP_129972818.1 5527611..5528828(+) (pilC) [Pseudomonas sp. 9.2(2024)]
ATGGCGGTCAAGGCAGCGAAAATCAGCATCTACGCCTGGGAAGGTACGGACCGCAAAGGCAGCAAGGTGACCGGCGAGTT
GAGTGGCCAGAACCCCGCACTGGTCAAGGCCCAGTTGCGCAAGCAAGGCATCAACCCCGGGAAGGTGCGCAAGAAATCCA
CCTCGTTGCTGAGCTTCGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAAATGGCGACCATGATGAAG
GCCGGCGTACCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAGAACCCGGCCATGCGCAAACTGGTCGACGA
GGTGAAACAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCCGCGCTGCGCAAGAAGCCTCAGTATTTTGACGAGTTGTACT
GCAACCTGGTGGATGCCGGTGAACAGTCCGGCGCGCTCGACACCCTGCTGGAACGGGTCGCGACCTATAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCGTCGGCCGTGGTGCTGGTGGCGGCGGTGGTTACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTTCAGTCGGTGTTCTCTGGCTTCGGTGCCGAACTGCCAGCCTTTACGTTGATGG
TGATCAGCCTGTCCGAATTCATGCAGCAATGGTGGTGGGCGATTCTTGGTCTGCTGGTGGCCGGTTTTTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCCATGCGCGACCGGCGTGACGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACGCTGAT
GTACAAGTCCGCAGTGGCGCGGTTCGCCCGGACCCTGTCGACCACCTTCGCAGCCGGCGTGCCGTTGGTTGAAGCGCTGG
ACTCGGTGGCCGGGGCCACCGGCAACGTGGTGTTCAAGCGCGCCGTGCTGCGTATCCGTCAGGACGTTTCCACCGGCATG
CAGCTGAATTTCTCGATGCGCTCCACCGGCATCTTCCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGAGATGCTCGACAAGGTCGCGGGTTTCTACGAGGACGAAGTGGACAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTCGGGGTGATCGTCGGCGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.817

100

0.756
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Acinetobacter baylyi ADP1

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.5

98.765

0.528
  pilC Vibrio cholerae strain A1552

44.192

97.778

0.432
  pilG Neisseria gonorrhoeae MS11

42.786

99.259

0.425
  pilG Neisseria meningitidis 44/76-A

42.574

99.753

0.425
  pilC Vibrio campbellii strain DS40M4

41.22

100

0.417
  pilC Thermus thermophilus HB27

38.903

99.012

0.385

Multiple sequence alignment