Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABFB52_RS24915 | Genome accession | NZ_CP155585 |
| Coordinates | 5528830..5529702 (+) | Length | 290 a.a. |
| NCBI ID | WP_102686305.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. 9.2(2024) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5523830..5534702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFB52_RS24890 (ABFB52_24890) | - | 5524141..5524437 (+) | 297 | WP_085747738.1 | DUF2845 domain-containing protein | - |
| ABFB52_RS24895 (ABFB52_24895) | - | 5524605..5524961 (-) | 357 | WP_011335977.1 | BON domain-containing protein | - |
| ABFB52_RS24900 (ABFB52_24900) | pilA/pilAI | 5525259..5525681 (-) | 423 | WP_085747737.1 | pilin | Machinery gene |
| ABFB52_RS24905 (ABFB52_24905) | pilB | 5525908..5527608 (+) | 1701 | WP_085747736.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFB52_RS24910 (ABFB52_24910) | pilC | 5527611..5528828 (+) | 1218 | WP_129972818.1 | type II secretion system F family protein | Machinery gene |
| ABFB52_RS24915 (ABFB52_24915) | pilD | 5528830..5529702 (+) | 873 | WP_102686305.1 | A24 family peptidase | Machinery gene |
| ABFB52_RS24920 (ABFB52_24920) | coaE | 5529699..5530322 (+) | 624 | WP_007959586.1 | dephospho-CoA kinase | - |
| ABFB52_RS24925 (ABFB52_24925) | yacG | 5530319..5530519 (+) | 201 | WP_011335983.1 | DNA gyrase inhibitor YacG | - |
| ABFB52_RS24930 (ABFB52_24930) | - | 5530526..5530741 (-) | 216 | WP_129972817.1 | hypothetical protein | - |
| ABFB52_RS24935 (ABFB52_24935) | - | 5530807..5531496 (-) | 690 | WP_129972816.1 | energy-coupling factor ABC transporter permease | - |
| ABFB52_RS24940 (ABFB52_24940) | - | 5531493..5531960 (-) | 468 | WP_085689765.1 | FAD/FMN-containing dehydrogenase | - |
| ABFB52_RS24945 (ABFB52_24945) | - | 5532091..5532717 (+) | 627 | WP_007959580.1 | DUF1780 domain-containing protein | - |
| ABFB52_RS24950 (ABFB52_24950) | - | 5532714..5533241 (+) | 528 | WP_102686306.1 | MOSC domain-containing protein | - |
| ABFB52_RS24955 (ABFB52_24955) | - | 5533293..5533466 (+) | 174 | WP_003228304.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32378.77 Da Isoelectric Point: 7.7029
>NTDB_id=997966 ABFB52_RS24915 WP_102686305.1 5528830..5529702(+) (pilD) [Pseudomonas sp. 9.2(2024)]
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPVEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGRCSSCSAPISKRYPLTELVCGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVTLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPVEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGRCSSCSAPISKRYPLTELVCGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVTLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=997966 ABFB52_RS24915 WP_102686305.1 5528830..5529702(+) (pilD) [Pseudomonas sp. 9.2(2024)]
ATGCCTATCGACGAACTCTTCAGTCTCTATCCACTGGCCTTTGTCTTCACCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTCCTCAATGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAATGGCGCCAGCAGGCTCACGATGTTTTGGGGC
TGCCCGTTGAAGCGCCGTTGCCCACTTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATTCCGGTGTTGAGTTACGTGTTCCTGCGCGGGCGCTGCTCAAGTTGCAGCGCCCCGATCAGCAAGCG
CTACCCGCTCACCGAACTGGTCTGCGGCCTGCTCTCGGCATTCATTGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAGCATCAGTTACTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGTCTGATCGTCAACAGCTTCGAGCTGTTCGTAACGCTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTTGGGGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGT
GCCGTGCTAGGGGTGATTTTGCTCAAGCTGCGGGACCAGAAAACCTCGACGCCGATTCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCTTCAGTCTCTATCCACTGGCCTTTGTCTTCACCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTCCTCAATGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAATGGCGCCAGCAGGCTCACGATGTTTTGGGGC
TGCCCGTTGAAGCGCCGTTGCCCACTTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATTCCGGTGTTGAGTTACGTGTTCCTGCGCGGGCGCTGCTCAAGTTGCAGCGCCCCGATCAGCAAGCG
CTACCCGCTCACCGAACTGGTCTGCGGCCTGCTCTCGGCATTCATTGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAGCATCAGTTACTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGTCTGATCGTCAACAGCTTCGAGCTGTTCGTAACGCTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTTGGGGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGT
GCCGTGCTAGGGGTGATTTTGCTCAAGCTGCGGGACCAGAAAACCTCGACGCCGATTCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.128 |
97.241 |
0.507 |
| pilD | Vibrio campbellii strain DS40M4 |
51.418 |
97.241 |
0.5 |
| pilD | Acinetobacter baumannii D1279779 |
48.175 |
94.483 |
0.455 |
| pilD | Acinetobacter nosocomialis M2 |
47.445 |
94.483 |
0.448 |
| pilD | Neisseria gonorrhoeae MS11 |
46.667 |
93.103 |
0.434 |