Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | ABDK11_RS14000 | Genome accession | NZ_CP155567 |
| Coordinates | 3224094..3224558 (-) | Length | 154 a.a. |
| NCBI ID | WP_346837133.1 | Uniprot ID | - |
| Organism | Microbulbifer sp. SAOS-129_SWC | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3219094..3229558
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABDK11_RS13985 (ABDK11_13985) | - | 3219220..3220704 (-) | 1485 | WP_346837131.1 | O-antigen ligase family protein | - |
| ABDK11_RS13990 (ABDK11_13990) | - | 3220992..3221960 (-) | 969 | WP_346836609.1 | IS30 family transposase | - |
| ABDK11_RS13995 (ABDK11_13995) | - | 3222046..3223845 (-) | 1800 | WP_346837132.1 | phosphoethanolamine transferase | - |
| ABDK11_RS14000 (ABDK11_14000) | pilE | 3224094..3224558 (-) | 465 | WP_346837133.1 | pilin | Machinery gene |
| ABDK11_RS14005 (ABDK11_14005) | pilB | 3224976..3226688 (+) | 1713 | WP_346837134.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABDK11_RS14010 (ABDK11_14010) | pilC | 3226814..3228025 (+) | 1212 | WP_346837135.1 | type II secretion system F family protein | Machinery gene |
| ABDK11_RS14015 (ABDK11_14015) | - | 3228045..3228929 (+) | 885 | WP_346837136.1 | A24 family peptidase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 15795.93 Da Isoelectric Point: 4.7246
>NTDB_id=997799 ABDK11_RS14000 WP_346837133.1 3224094..3224558(-) (pilE) [Microbulbifer sp. SAOS-129_SWC]
MKKQQGFTLIELMIVVAIIGILAAVALPAYSDYTKRAKMSEVLGFAAQAKSAVAEAYQSTGTLPTTNAEAGLDASTALTS
KYVESVAVAANGVITVAIQGTNDATLDATSISFSPMQGDGTTAITASYNGPLGWKCAVGDSNAAKFFPSECRST
MKKQQGFTLIELMIVVAIIGILAAVALPAYSDYTKRAKMSEVLGFAAQAKSAVAEAYQSTGTLPTTNAEAGLDASTALTS
KYVESVAVAANGVITVAIQGTNDATLDATSISFSPMQGDGTTAITASYNGPLGWKCAVGDSNAAKFFPSECRST
Nucleotide
Download Length: 465 bp
>NTDB_id=997799 ABDK11_RS14000 WP_346837133.1 3224094..3224558(-) (pilE) [Microbulbifer sp. SAOS-129_SWC]
ATGAAAAAGCAACAGGGTTTTACTCTTATTGAATTGATGATCGTGGTTGCGATCATCGGTATTCTGGCTGCGGTAGCGCT
GCCGGCTTACTCTGATTACACCAAGCGCGCCAAGATGAGCGAAGTATTGGGCTTTGCTGCGCAGGCCAAATCCGCAGTAG
CGGAAGCGTATCAGTCTACAGGCACCCTGCCGACGACTAATGCAGAAGCTGGCCTGGATGCTTCGACTGCTCTTACTTCC
AAATACGTTGAGAGCGTAGCTGTAGCGGCCAATGGTGTGATTACTGTGGCTATCCAGGGCACTAACGATGCCACTTTGGA
TGCTACTAGCATTTCATTTTCACCGATGCAGGGTGATGGAACCACTGCAATCACTGCGTCCTATAATGGCCCGCTGGGCT
GGAAGTGCGCGGTCGGCGACTCGAATGCTGCCAAGTTCTTCCCGTCCGAGTGCCGTTCCACCTAA
ATGAAAAAGCAACAGGGTTTTACTCTTATTGAATTGATGATCGTGGTTGCGATCATCGGTATTCTGGCTGCGGTAGCGCT
GCCGGCTTACTCTGATTACACCAAGCGCGCCAAGATGAGCGAAGTATTGGGCTTTGCTGCGCAGGCCAAATCCGCAGTAG
CGGAAGCGTATCAGTCTACAGGCACCCTGCCGACGACTAATGCAGAAGCTGGCCTGGATGCTTCGACTGCTCTTACTTCC
AAATACGTTGAGAGCGTAGCTGTAGCGGCCAATGGTGTGATTACTGTGGCTATCCAGGGCACTAACGATGCCACTTTGGA
TGCTACTAGCATTTCATTTTCACCGATGCAGGGTGATGGAACCACTGCAATCACTGCGTCCTATAATGGCCCGCTGGGCT
GGAAGTGCGCGGTCGGCGACTCGAATGCTGCCAAGTTCTTCCCGTCCGAGTGCCGTTCCACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.785 |
100 |
0.481 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
41.566 |
100 |
0.448 |
| pilA2 | Legionella pneumophila str. Paris |
44.079 |
98.701 |
0.435 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.079 |
98.701 |
0.435 |
| pilE | Neisseria gonorrhoeae MS11 |
40.361 |
100 |
0.435 |
| comP | Acinetobacter baylyi ADP1 |
38.509 |
100 |
0.403 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.646 |
100 |
0.383 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
35.329 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.135 |
91.558 |
0.377 |