Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABDK11_RS14010 Genome accession   NZ_CP155567
Coordinates   3226814..3228025 (+) Length   403 a.a.
NCBI ID   WP_346837135.1    Uniprot ID   -
Organism   Microbulbifer sp. SAOS-129_SWC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3221814..3233025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDK11_RS13995 (ABDK11_13995) - 3222046..3223845 (-) 1800 WP_346837132.1 phosphoethanolamine transferase -
  ABDK11_RS14000 (ABDK11_14000) pilE 3224094..3224558 (-) 465 WP_346837133.1 pilin Machinery gene
  ABDK11_RS14005 (ABDK11_14005) pilB 3224976..3226688 (+) 1713 WP_346837134.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABDK11_RS14010 (ABDK11_14010) pilC 3226814..3228025 (+) 1212 WP_346837135.1 type II secretion system F family protein Machinery gene
  ABDK11_RS14015 (ABDK11_14015) - 3228045..3228929 (+) 885 WP_346837136.1 A24 family peptidase -
  ABDK11_RS14020 (ABDK11_14020) coaE 3229172..3229771 (+) 600 WP_346837137.1 dephospho-CoA kinase -
  ABDK11_RS14025 (ABDK11_14025) yacG 3229781..3229996 (+) 216 WP_346837138.1 DNA gyrase inhibitor YacG -
  ABDK11_RS14030 (ABDK11_14030) mutT 3230059..3230460 (-) 402 WP_346837139.1 8-oxo-dGTP diphosphatase MutT -
  ABDK11_RS14035 (ABDK11_14035) argJ 3230471..3231688 (-) 1218 WP_346837140.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43460.36 Da        Isoelectric Point: 9.5879

>NTDB_id=997801 ABDK11_RS14010 WP_346837135.1 3226814..3228025(+) (pilC) [Microbulbifer sp. SAOS-129_SWC]
MANAAAVAYVYKGVDTKGKKVEGEINGTSPALVKAQLRKQGIIANRVQKKPKPLFGGKKKVKPADIAIFTRQLATMMKAG
VPLVQSFEIVADGLDNQGVKELVLKIRDEVASGTAFADALRKHPLYFDDLFCNLVASGEQSGALETMLDRIATYKEKTEA
LKSKIKKAMTYPIAVIVVAIVVTSILLIKVVPQFAETFSSFGAQLPAFTLFVVGLSEWMQANWFIALICVVFGIGGLVEA
KKRNRKVADFFDRMILKMPIVGIINYNSIAARFGRTLSTTFAAGVPLIDALKSVAGATGNVIYEEATLKIRDSVATGIPL
NAAMRHSGLYPTMLIQMAAIGEESGALDEMLGKAADFYEDAVDNMVDNLTTLLEPMIMAVLGILVGGLMIAMYLPIFQLG
NVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=997801 ABDK11_RS14010 WP_346837135.1 3226814..3228025(+) (pilC) [Microbulbifer sp. SAOS-129_SWC]
ATGGCCAATGCCGCAGCAGTCGCATACGTCTACAAGGGAGTGGACACCAAAGGCAAAAAGGTCGAGGGAGAGATCAACGG
TACCAGCCCCGCACTGGTCAAGGCGCAACTGCGCAAACAGGGCATAATCGCCAACCGGGTACAGAAGAAGCCCAAACCAC
TTTTTGGTGGCAAAAAGAAAGTCAAGCCCGCCGATATCGCCATCTTTACCCGCCAACTGGCTACGATGATGAAGGCGGGC
GTACCGCTGGTGCAGAGTTTTGAAATCGTCGCCGACGGACTCGACAATCAGGGCGTTAAAGAACTTGTCTTGAAAATTCG
CGACGAAGTCGCCTCGGGTACGGCGTTTGCCGATGCGTTGCGTAAACATCCGCTCTATTTTGATGATCTATTCTGTAACT
TGGTGGCCTCTGGTGAGCAATCCGGTGCATTGGAAACGATGCTCGATCGTATTGCTACCTACAAAGAAAAAACAGAAGCG
CTCAAGTCCAAAATCAAAAAAGCGATGACCTATCCGATCGCAGTGATTGTGGTCGCGATAGTTGTCACCTCTATCCTATT
GATCAAGGTGGTTCCACAGTTTGCGGAGACGTTCTCCAGTTTCGGCGCCCAACTGCCGGCCTTCACCCTGTTTGTCGTTG
GACTTTCAGAGTGGATGCAGGCCAACTGGTTTATTGCGCTGATCTGTGTAGTCTTCGGTATTGGCGGCCTTGTCGAAGCG
AAGAAACGCAACCGGAAAGTAGCCGACTTCTTTGACCGCATGATCCTTAAAATGCCGATTGTTGGCATAATCAATTACAA
CTCGATTGCAGCCAGGTTCGGTCGTACGCTTTCAACAACCTTTGCTGCCGGTGTGCCGCTGATCGATGCTCTCAAGTCAG
TCGCCGGCGCTACCGGCAATGTGATTTACGAAGAAGCAACCCTGAAAATCCGCGACTCCGTGGCTACTGGCATCCCGTTG
AATGCCGCTATGCGCCATTCCGGTCTATATCCAACCATGCTGATTCAGATGGCGGCGATCGGCGAAGAATCCGGCGCGCT
CGATGAGATGCTCGGCAAGGCTGCCGACTTCTACGAAGACGCGGTCGACAACATGGTCGACAACCTGACTACCCTGCTGG
AACCCATGATCATGGCTGTACTGGGTATTCTGGTCGGTGGCCTGATGATTGCCATGTACCTGCCCATTTTCCAGCTGGGC
AACGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.304

98.015

0.63
  pilC Acinetobacter baylyi ADP1

62.72

98.511

0.618
  pilC Acinetobacter baumannii D1279779

62.469

98.511

0.615
  pilC Legionella pneumophila strain ERS1305867

56.576

100

0.566
  pilG Neisseria gonorrhoeae MS11

45.202

98.263

0.444
  pilG Neisseria meningitidis 44/76-A

44.949

98.263

0.442
  pilC Vibrio cholerae strain A1552

42.172

98.263

0.414
  pilC Vibrio campbellii strain DS40M4

40.796

99.752

0.407
  pilC Thermus thermophilus HB27

36.725

100

0.367

Multiple sequence alignment