Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KZZ19_RS10410 Genome accession   NZ_CP155559
Coordinates   2011013..2011363 (+) Length   116 a.a.
NCBI ID   WP_088096251.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2006013..2016363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS10385 (KZZ19_010385) - 2006254..2007036 (-) 783 WP_088096246.1 hypothetical protein -
  KZZ19_RS10390 (KZZ19_010390) - 2007146..2007793 (+) 648 WP_088096247.1 HD domain-containing protein -
  KZZ19_RS10395 (KZZ19_010395) - 2007790..2009685 (+) 1896 WP_237981002.1 ABC-F family ATP-binding cassette domain-containing protein -
  KZZ19_RS10400 (KZZ19_010400) - 2009761..2010492 (+) 732 WP_088096249.1 Bax inhibitor-1/YccA family protein -
  KZZ19_RS10405 (KZZ19_010405) - 2010597..2010851 (+) 255 WP_237981003.1 DUF4318 domain-containing protein -
  KZZ19_RS10410 (KZZ19_010410) ssbA 2011013..2011363 (+) 351 WP_088096251.1 single-stranded DNA-binding protein Machinery gene
  KZZ19_RS10415 (KZZ19_010415) - 2011506..2012633 (+) 1128 WP_237981004.1 conserved virulence factor C family protein -
  KZZ19_RS10420 (KZZ19_010420) - 2012637..2013020 (+) 384 WP_237981005.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  KZZ19_RS10425 (KZZ19_010425) - 2013104..2013538 (+) 435 WP_088096254.1 BrxA/BrxB family bacilliredoxin -
  KZZ19_RS10430 (KZZ19_010430) - 2013588..2014364 (+) 777 WP_237981006.1 class I SAM-dependent methyltransferase -
  KZZ19_RS10435 (KZZ19_010435) argS 2014665..2016353 (+) 1689 WP_237981007.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13403.37 Da        Isoelectric Point: 9.6868

>NTDB_id=997747 KZZ19_RS10410 WP_088096251.1 2011013..2011363(+) (ssbA) [Bacillus thuringiensis strain HSY204]
MMNRVVLIGRLTKEPELYYTKQGAAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGHHNKMGL

Nucleotide


Download         Length: 351 bp        

>NTDB_id=997747 KZZ19_RS10410 WP_088096251.1 2011013..2011363(+) (ssbA) [Bacillus thuringiensis strain HSY204]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGCCGCTTATGC
AAGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTCGTTT
GGAGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGCATCACAATAAGATGGGACTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

91.379

0.543
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

91.379

0.517
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.887

91.379

0.474
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

90.517

0.414
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.34

91.379

0.405
  ssbA Streptococcus mutans UA159

40.566

91.379

0.371
  ssbB/cilA Streptococcus mitis NCTC 12261

40.566

91.379

0.371
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.566

91.379

0.371
  ssbB/cilA Streptococcus pneumoniae D39

39.623

91.379

0.362
  ssbB/cilA Streptococcus pneumoniae R6

39.623

91.379

0.362
  ssbB/cilA Streptococcus mitis SK321

39.623

91.379

0.362
  ssbB/cilA Streptococcus pneumoniae Rx1

39.623

91.379

0.362

Multiple sequence alignment