Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | ABC804_RS02125 | Genome accession | NZ_CP155536 |
| Coordinates | 384669..385064 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282442.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain M264-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 379669..390064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABC804_RS02075 (ABC804_02075) | - | 379794..380156 (+) | 363 | WP_000078808.1 | DUF2200 family protein | - |
| ABC804_RS02080 (ABC804_02080) | - | 380153..380656 (+) | 504 | WP_000800942.1 | phosphatase PAP2 family protein | - |
| ABC804_RS02085 (ABC804_02085) | - | 380770..381216 (+) | 447 | WP_000776589.1 | LytTR family DNA-binding domain-containing protein | - |
| ABC804_RS02090 (ABC804_02090) | - | 381222..381896 (+) | 675 | WP_000725749.1 | membrane protein | - |
| ABC804_RS02095 (ABC804_02095) | - | 382057..382248 (+) | 192 | WP_000122504.1 | hypothetical protein | - |
| ABC804_RS02100 (ABC804_02100) | - | 382273..382335 (+) | 63 | WP_219300018.1 | hypothetical protein | - |
| ABC804_RS02105 (ABC804_02105) | - | 382533..382832 (+) | 300 | WP_001013974.1 | DUF4651 domain-containing protein | - |
| ABC804_RS02110 (ABC804_02110) | - | 382829..383146 (+) | 318 | WP_000615770.1 | thioredoxin family protein | - |
| ABC804_RS02115 (ABC804_02115) | ytpR | 383162..383788 (+) | 627 | WP_000578286.1 | YtpR family tRNA-binding protein | - |
| ABC804_RS02120 (ABC804_02120) | - | 383830..384591 (+) | 762 | WP_001107751.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| ABC804_RS02125 (ABC804_02125) | ssbB/cilA | 384669..385064 (+) | 396 | WP_000282442.1 | single-stranded DNA-binding protein | Machinery gene |
| ABC804_RS02130 (ABC804_02130) | groES | 385220..385504 (+) | 285 | WP_000917304.1 | co-chaperone GroES | - |
| ABC804_RS02135 (ABC804_02135) | groL | 385520..387142 (+) | 1623 | WP_000031573.1 | chaperonin GroEL | - |
| ABC804_RS02140 (ABC804_02140) | - | 387280..388036 (+) | 757 | Protein_386 | epoxyqueuosine reductase QueH | - |
| ABC804_RS02145 (ABC804_02145) | - | 388482..389255 (+) | 774 | WP_000566049.1 | class I SAM-dependent methyltransferase | - |
| ABC804_RS02150 (ABC804_02150) | - | 389268..389606 (+) | 339 | WP_001809290.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14907.85 Da Isoelectric Point: 5.9409
>NTDB_id=997413 ABC804_RS02125 WP_000282442.1 384669..385064(+) (ssbB/cilA) [Streptococcus pneumoniae strain M264-3]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=997413 ABC804_RS02125 WP_000282442.1 384669..385064(+) (ssbB/cilA) [Streptococcus pneumoniae strain M264-3]
ATGTATAATAAAGTTATCTTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCTTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
97.71 |
100 |
0.977 |
| ssbA | Streptococcus mutans UA159 |
75.573 |
100 |
0.756 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.992 |
100 |
0.71 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.714 |
85.496 |
0.519 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.887 |
80.916 |
0.42 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.788 |
86.26 |
0.412 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
44.444 |
82.443 |
0.366 |