Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | AAHT65_RS03970 | Genome accession | NZ_CP154443 |
| Coordinates | 768889..769230 (-) | Length | 113 a.a. |
| NCBI ID | WP_061570877.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain SW | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 763889..774230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAHT65_RS03955 (AAHT65_03955) | - | 764126..766900 (+) | 2775 | WP_343311016.1 | DEAD/DEAH box helicase | - |
| AAHT65_RS03960 (AAHT65_03960) | - | 767023..767880 (-) | 858 | WP_094232887.1 | Cof-type HAD-IIB family hydrolase | - |
| AAHT65_RS03965 (AAHT65_03965) | - | 767886..768662 (-) | 777 | WP_061570962.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| AAHT65_RS03970 (AAHT65_03970) | ssbB | 768889..769230 (-) | 342 | WP_061570877.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| AAHT65_RS03975 (AAHT65_03975) | - | 769308..769691 (-) | 384 | WP_106044688.1 | hypothetical protein | - |
| AAHT65_RS03980 (AAHT65_03980) | - | 769866..770276 (+) | 411 | WP_061570879.1 | YwpF-like family protein | - |
| AAHT65_RS03985 (AAHT65_03985) | - | 770550..771209 (-) | 660 | WP_315916075.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12530.24 Da Isoelectric Point: 8.4667
>NTDB_id=993409 AAHT65_RS03970 WP_061570877.1 768889..769230(-) (ssbB) [Bacillus atrophaeus strain SW]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGISGRIQTR
SYENAEGVKVYVTEVMADTVRFMDSKAREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGISGRIQTR
SYENAEGVKVYVTEVMADTVRFMDSKAREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=993409 AAHT65_RS03970 WP_061570877.1 768889..769230(-) (ssbB) [Bacillus atrophaeus strain SW]
TTGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACAATCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCAGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCATAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATTCTAAAGC
CCGGGAAAAAGCTGCCGATTGA
TTGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACAATCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCAGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCATAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATTCTAAAGC
CCGGGAAAAAGCTGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
91.15 |
100 |
0.912 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
93.805 |
0.575 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.148 |
95.575 |
0.46 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.509 |
93.805 |
0.389 |