Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AAHT66_RS06265 Genome accession   NZ_CP154441
Coordinates   1182880..1183221 (+) Length   113 a.a.
NCBI ID   WP_014665657.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1177880..1188221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS06230 (AAHT66_06230) flhP 1177984..1178793 (+) 810 WP_289348491.1 flagellar hook-basal body complex protein FlhP -
  AAHT66_RS06235 (AAHT66_06235) - 1178814..1179878 (-) 1065 WP_087992652.1 tetratricopeptide repeat protein -
  AAHT66_RS06240 (AAHT66_06240) fabZ 1180071..1180496 (+) 426 WP_003235662.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AAHT66_RS06245 (AAHT66_06245) mscL 1180568..1180960 (+) 393 WP_087992808.1 large conductance mechanosensitive channel protein MscL -
  AAHT66_RS06250 (AAHT66_06250) blaOXA 1180989..1181792 (-) 804 WP_087992651.1 class D beta-lactamase -
  AAHT66_RS06255 (AAHT66_06255) - 1181835..1182245 (-) 411 WP_087992807.1 YwpF-like family protein -
  AAHT66_RS06260 (AAHT66_06260) ywpG 1182420..1182803 (+) 384 WP_087992650.1 DynA interaction protein YwpG -
  AAHT66_RS06265 (AAHT66_06265) ssbB 1182880..1183221 (+) 342 WP_014665657.1 single-stranded DNA-binding protein SsbB Machinery gene
  AAHT66_RS06270 (AAHT66_06270) glcR 1183447..1184247 (+) 801 WP_087992806.1 transcriptional regulator GlcR -
  AAHT66_RS06275 (AAHT66_06275) - 1184228..1185085 (+) 858 WP_333516484.1 Cof-type HAD-IIB family hydrolase -
  AAHT66_RS06280 (AAHT66_06280) - 1185216..1187984 (-) 2769 WP_087992649.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12476.14 Da        Isoelectric Point: 7.8150

>NTDB_id=993336 AAHT66_RS06265 WP_014665657.1 1182880..1183221(+) (ssbB) [Bacillus inaquosorum strain XN303]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=993336 AAHT66_RS06265 WP_014665657.1 1182880..1183221(+) (ssbB) [Bacillus inaquosorum strain XN303]
ATGTTCAATCAGGTTATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAGGCCGATTACGTCAATTGCACGCTTT
GGAGAAAAACCGCTGAAAACACAGCGTTATATTGCCAAAAAGGTTCTCTCGTCGGCGTTAGCGGACGGATTCAGACAAGG
AGCTATGAAAACGCAGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGTGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.17

93.805

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398

Multiple sequence alignment