Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GBSCOH1_RS09805 Genome accession   NZ_HG939456
Coordinates   1964774..1966033 (-) Length   419 a.a.
NCBI ID   WP_001200982.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1959774..1971033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS09770 (GBSCOH1_1888) - 1959925..1961466 (-) 1542 WP_000230034.1 hypothetical protein -
  GBSCOH1_RS11365 (GBSCOH1_1889) - 1961512..1961634 (-) 123 WP_001285712.1 hypothetical protein -
  GBSCOH1_RS09780 (GBSCOH1_1890) - 1961717..1962034 (-) 318 WP_000940933.1 DUF1292 domain-containing protein -
  GBSCOH1_RS09785 (GBSCOH1_1891) ruvX 1962060..1962479 (-) 420 WP_001873911.1 Holliday junction resolvase RuvX -
  GBSCOH1_RS09790 (GBSCOH1_1892) - 1962479..1962745 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  GBSCOH1_RS09795 (GBSCOH1_1893) spx 1962947..1963345 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  GBSCOH1_RS09800 (GBSCOH1_1894) recA 1963561..1964700 (-) 1140 WP_001085741.1 recombinase RecA -
  GBSCOH1_RS09805 (GBSCOH1_1895) cinA 1964774..1966033 (-) 1260 WP_001200982.1 competence/damage-inducible protein A Machinery gene
  GBSCOH1_RS09810 (GBSCOH1_1896) - 1966122..1966673 (-) 552 WP_000817340.1 DNA-3-methyladenine glycosylase I -
  GBSCOH1_RS09815 (GBSCOH1_1897) ruvA 1966696..1967286 (-) 591 WP_000272489.1 Holliday junction branch migration protein RuvA Machinery gene
  GBSCOH1_RS09820 (GBSCOH1_1898) - 1967288..1968520 (-) 1233 WP_000657474.1 MDR family MFS transporter -
  GBSCOH1_RS09825 (GBSCOH1_1899) hexB 1968552..1970525 (-) 1974 WP_000034615.1 DNA mismatch repair endonuclease MutL Machinery gene
  GBSCOH1_RS09830 (GBSCOH1_1900) - 1970751..1970954 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45485.36 Da        Isoelectric Point: 6.3060

>NTDB_id=989907 GBSCOH1_RS09805 WP_001200982.1 1964774..1966033(-) (cinA) [Streptococcus agalactiae COH1]
MRAEIIAVGTEILTGQIVNTNAQFLSEKMAELGIDIYFQTAVGDNEERLLSLLDIASQRSQMVILCGGLGPTEDDLTKQT
LAKFLGKSLTVDLLASQKLDRFFASRPQFARTPNNERQAQLVEGSIPLQNLTGLAVGGIVTSKGVQYMVLPGPPSELKPM
VMEQVVPILSNNGTKLYSRVLRFFGIGESQLVTILEDIIKNQTDPTIAPYAKIGEVTLRLSTKAENQNEADFKLDSLEKE
ILALKTLDNRKLKDLLYGYGDNNSMARTVLELLKVQNKTITAAESLTAGLFQSQLAEFSGASQVFNGGFTTYSMEAKSQL
LGIPKKKLQEYGVVSHFTAEAMAQQARQLLKADFGIGLTGVAGPDELEGYPAGTVFIGIATPEGVSSIKVSIGGKSRSDV
RHISTLHAFDLVRRALLKI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=989907 GBSCOH1_RS09805 WP_001200982.1 1964774..1966033(-) (cinA) [Streptococcus agalactiae COH1]
GTGAGGGCTGAAATTATCGCTGTAGGAACAGAAATTTTAACAGGACAGATCGTTAATACAAACGCACAATTTTTGTCGGA
GAAAATGGCAGAATTGGGAATTGATATTTATTTCCAGACAGCTGTAGGAGATAATGAGGAACGTTTATTATCGCTTTTAG
ATATAGCTAGTCAGCGCAGTCAAATGGTTATCCTATGTGGTGGACTTGGACCTACAGAGGATGATTTAACGAAACAAACT
TTGGCTAAATTTTTAGGTAAATCATTAACAGTGGATTTATTAGCTAGTCAAAAATTGGATCGTTTTTTTGCAAGTCGTCC
TCAGTTTGCTAGAACGCCAAATAATGAACGACAAGCTCAATTGGTTGAAGGCTCAATACCTCTACAAAACCTTACTGGTC
TAGCTGTTGGTGGTATCGTTACATCTAAGGGAGTCCAATATATGGTTTTACCAGGTCCGCCTAGTGAATTAAAGCCAATG
GTTATGGAGCAGGTGGTACCTATTTTGTCAAATAATGGCACAAAATTATATTCACGTGTATTGAGATTCTTTGGTATCGG
TGAGAGTCAGTTAGTCACAATCTTAGAAGACATAATTAAGAATCAGACAGATCCAACTATAGCACCATATGCAAAGATTG
GTGAGGTAACTTTAAGGTTATCAACGAAAGCTGAAAATCAGAATGAAGCCGACTTTAAATTAGATAGCTTAGAAAAAGAA
ATACTTGCTCTTAAGACATTAGATAACCGTAAATTAAAAGATTTATTATATGGCTATGGTGATAATAATAGTATGGCACG
TACTGTTTTAGAATTATTGAAAGTACAAAATAAAACGATTACTGCCGCAGAGAGCTTAACAGCAGGGTTATTTCAATCTC
AGTTAGCAGAATTTTCTGGTGCTTCGCAAGTTTTTAATGGTGGCTTTACGACCTATAGTATGGAAGCAAAATCACAACTT
CTCGGCATCCCTAAGAAAAAATTGCAAGAATATGGAGTTGTCAGTCATTTTACAGCTGAGGCAATGGCTCAGCAAGCTCG
CCAGCTTTTAAAAGCAGATTTTGGTATCGGTTTAACGGGAGTTGCTGGTCCTGATGAGTTGGAAGGATACCCTGCAGGTA
CAGTTTTTATTGGGATTGCAACCCCTGAAGGCGTTTCTTCTATTAAAGTATCGATTGGAGGGAAGAGCCGCTCAGATGTC
CGTCATATCAGTACTTTACATGCTTTTGACCTGGTGCGTAGGGCTTTATTAAAGATATAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(263-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.463

99.523

0.711
  cinA Streptococcus mitis NCTC 12261

71.223

99.523

0.709
  cinA Streptococcus pneumoniae TIGR4

70.024

99.523

0.697
  cinA Streptococcus pneumoniae R36A

70.024

99.523

0.697
  cinA Streptococcus pneumoniae Rx1

70.024

99.523

0.697
  cinA Streptococcus pneumoniae R6

70.024

99.523

0.697
  cinA Streptococcus pneumoniae D39

69.784

99.523

0.695
  cinA Streptococcus mutans UA159

68.106

99.523

0.678
  cinA Streptococcus suis isolate S10

54.808

99.284

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

43.78

99.761

0.437

Multiple sequence alignment