Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GBSCOH1_RS09815 Genome accession   NZ_HG939456
Coordinates   1966696..1967286 (-) Length   196 a.a.
NCBI ID   WP_000272489.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961696..1972286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS09780 (GBSCOH1_1890) - 1961717..1962034 (-) 318 WP_000940933.1 DUF1292 domain-containing protein -
  GBSCOH1_RS09785 (GBSCOH1_1891) ruvX 1962060..1962479 (-) 420 WP_001873911.1 Holliday junction resolvase RuvX -
  GBSCOH1_RS09790 (GBSCOH1_1892) - 1962479..1962745 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  GBSCOH1_RS09795 (GBSCOH1_1893) spx 1962947..1963345 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  GBSCOH1_RS09800 (GBSCOH1_1894) recA 1963561..1964700 (-) 1140 WP_001085741.1 recombinase RecA -
  GBSCOH1_RS09805 (GBSCOH1_1895) cinA 1964774..1966033 (-) 1260 WP_001200982.1 competence/damage-inducible protein A Machinery gene
  GBSCOH1_RS09810 (GBSCOH1_1896) - 1966122..1966673 (-) 552 WP_000817340.1 DNA-3-methyladenine glycosylase I -
  GBSCOH1_RS09815 (GBSCOH1_1897) ruvA 1966696..1967286 (-) 591 WP_000272489.1 Holliday junction branch migration protein RuvA Machinery gene
  GBSCOH1_RS09820 (GBSCOH1_1898) - 1967288..1968520 (-) 1233 WP_000657474.1 MDR family MFS transporter -
  GBSCOH1_RS09825 (GBSCOH1_1899) hexB 1968552..1970525 (-) 1974 WP_000034615.1 DNA mismatch repair endonuclease MutL Machinery gene
  GBSCOH1_RS09830 (GBSCOH1_1900) - 1970751..1970954 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21682.92 Da        Isoelectric Point: 5.7448

>NTDB_id=989908 GBSCOH1_RS09815 WP_000272489.1 1966696..1967286(-) (ruvA) [Streptococcus agalactiae COH1]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNDTVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=989908 GBSCOH1_RS09815 WP_000272489.1 1966696..1967286(-) (ruvA) [Streptococcus agalactiae COH1]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGATACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.02

100

0.684
  ruvA Streptococcus pneumoniae D39

68.02

100

0.684
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408