Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAG068_RS10485 Genome accession   NZ_CP152427
Coordinates   2013076..2013414 (+) Length   112 a.a.
NCBI ID   WP_342719220.1    Uniprot ID   -
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2008076..2018414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS10460 (AAG068_10460) - 2008177..2009100 (-) 924 WP_342719217.1 hypothetical protein -
  AAG068_RS10465 (AAG068_10465) - 2009210..2009857 (+) 648 WP_342719218.1 HD domain-containing protein -
  AAG068_RS10470 (AAG068_10470) - 2009854..2011749 (+) 1896 WP_342719219.1 ABC-F family ATP-binding cassette domain-containing protein -
  AAG068_RS10475 (AAG068_10475) - 2011825..2012556 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family protein -
  AAG068_RS10480 (AAG068_10480) - 2012663..2012917 (+) 255 WP_098668970.1 DUF4318 domain-containing protein -
  AAG068_RS10485 (AAG068_10485) ssb 2013076..2013414 (+) 339 WP_342719220.1 single-stranded DNA-binding protein Machinery gene
  AAG068_RS10490 (AAG068_10490) - 2013440..2014030 (-) 591 WP_342719221.1 TetR/AcrR family transcriptional regulator -
  AAG068_RS10495 (AAG068_10495) - 2014153..2015286 (-) 1134 WP_342719222.1 FAD-dependent oxidoreductase -
  AAG068_RS10500 (AAG068_10500) - 2015545..2016672 (+) 1128 WP_342719223.1 conserved virulence factor C family protein -
  AAG068_RS10505 (AAG068_10505) - 2016676..2017059 (+) 384 WP_342719224.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  AAG068_RS10510 (AAG068_10510) - 2017143..2017577 (+) 435 WP_098387880.1 BrxA/BrxB family bacilliredoxin -
  AAG068_RS10515 (AAG068_10515) - 2017627..2018403 (+) 777 WP_342719225.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12936.76 Da        Isoelectric Point: 9.0926

>NTDB_id=989321 AAG068_RS10485 WP_342719220.1 2013076..2013414(+) (ssb) [Bacillus paramycoides strain JYZ-SD5]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCTIWRRSAENVTEYCTKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIENITFLEKRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=989321 AAG068_RS10485 WP_342719220.1 2013076..2013414(+) (ssb) [Bacillus paramycoides strain JYZ-SD5]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAGCAAGTAGATTTTATTAATTGCACGATAT
GGAGAAGGTCAGCTGAGAATGTAACTGAATATTGTACGAAAGGCTCACTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGACCAAGGAAAGAGAATATATATAACGGAAGTAGTGATTGAAAATATTACATTTTTGGAGAAAAGGCG
GGAGGGGGCATCACAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.562
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.212

100

0.527
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

93.75

0.429
  ssbA Streptococcus mutans UA159

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402

Multiple sequence alignment