Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAGD16_RS00705 Genome accession   NZ_CP152390
Coordinates   144979..146490 (+) Length   503 a.a.
NCBI ID   WP_036980878.1    Uniprot ID   A0A9W4W6Z3
Organism   Pseudoalteromonas sp. M58     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 139979..151490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGD16_RS00670 yrfG 140765..141412 (-) 648 WP_024601289.1 GMP/IMP nucleotidase -
  AAGD16_RS00675 nudE 141699..142271 (+) 573 WP_024601288.1 ADP compounds hydrolase NudE -
  AAGD16_RS00680 cysQ 142264..143061 (+) 798 WP_028835908.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AAGD16_RS00700 - 144330..144944 (+) 615 WP_024601286.1 trimeric intracellular cation channel family protein -
  AAGD16_RS00705 comM 144979..146490 (+) 1512 WP_036980878.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAGD16_RS00710 - 146487..147191 (-) 705 WP_377113020.1 response regulator transcription factor -
  AAGD16_RS00715 - 147357..149849 (-) 2493 WP_377113023.1 prolyl oligopeptidase family serine peptidase -
  AAGD16_RS00720 - 149934..151001 (+) 1068 WP_028835911.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55096.17 Da        Isoelectric Point: 6.8719

>NTDB_id=988863 AAGD16_RS00705 WP_036980878.1 144979..146490(+) (comM) [Pseudoalteromonas sp. M58]
MSLARIFSRAQVGINAPEVMVEVHLGNGLPAFHIVGLPEASVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEIRAVNAILPSVLGAKEQNRCCFLPLENDSLASLVSGVKRKAVSSI
QEVWGDLLNQQPLPLNITYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMSTIMPTMS
DDEAIDTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLIAALNPSPTGCHHDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLSSVELQSTTAEE
TSAEVRARVEAAYAIQLKRQGKVNARLNNKEMSLYCELPAAELQFLARASEKLALSPRSYHRVIKVARTISDLKGAPQIS
LNELKEALNYRAFERLLSQLTQY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=988863 AAGD16_RS00705 WP_036980878.1 144979..146490(+) (comM) [Pseudoalteromonas sp. M58]
ATGTCGTTAGCCCGTATATTTTCTCGCGCACAAGTAGGAATTAATGCCCCCGAGGTTATGGTTGAAGTGCATTTAGGGAA
TGGTTTACCTGCATTTCATATTGTCGGCTTACCCGAAGCATCGGTTAAAGAGGCCAAGGATAGAGTACGCAGCGCCCTTG
AAAACTCTCAATTTGGATTTCCCGATCAACGTATCACCGTTAATTTAGCACCTGCCGATTTACCAAAAGACGGCGGGCGG
TTTGACCTTGCGATTGCGGTAGGCATTTTGGTCGCATCGGGGCAAATAGTCTGCCCTGATATTCATAAGTATGAGTTTTA
TGGTGAGCTTGCACTTAATGGTGAAATACGTGCAGTGAATGCTATTTTACCCTCAGTGCTCGGGGCTAAAGAGCAAAACC
GTTGCTGTTTTCTTCCTCTTGAAAACGATAGTTTGGCCAGCCTTGTCAGCGGTGTAAAACGAAAAGCGGTAAGCTCTATA
CAAGAGGTGTGGGGAGACTTACTCAACCAACAACCTTTACCATTGAATATTACCTACCCTGACTGTACCCAAGCGCCAGA
CTTTTTACTCGATTTAAGTGATGTAAAAGGCCAACCCGGTGCTAAACGAGTACTAGAAATTGCTGCCGCAGGTGGACATA
ACCTACTATTTTTAGGGCCACCAGGAACCGGCAAATCAATGCTTGCGCAACGAATGTCTACAATAATGCCAACTATGTCA
GATGATGAAGCCATTGATACCGCTGCTTTGTATTCCATTATTGGCCACTCAATCGATTTAACCAACTGGCGTCAGCGACC
ATTTCGAAATCCTCATCACACTTGCTCTGCAGTTGCGCTGGTAGGCGGTTCGTCTAACCCTAAACCCGGTGAAATATCGT
TAGCGCACAATGGCGTATTATTTTTAGATGAGCTGCCTGAATTTGAGCGCAAAGTACTGGACTCGTTACGAGAACCAATG
GAAACCGGAACCGTGACGATTTCGCGTGCGGCAAGACAAATGGAATTTCCGGCACAGTTTCAGCTTATTGCAGCACTTAA
TCCCAGCCCGACAGGGTGCCATCATGATAAACGGGCGACCCCTGATCAAGTGATGCGTTATTTATCGCGGGTATCGGGAC
CGTTTATCGATAGAATTGATTTGCAAATTGAGCTCCCTAGACTAAGCAGCGTGGAGCTACAAAGTACGACTGCAGAAGAA
ACCAGTGCTGAAGTGAGAGCGCGAGTAGAAGCGGCTTATGCAATACAATTAAAACGCCAAGGTAAAGTGAATGCGCGGCT
AAATAACAAAGAAATGAGCTTATACTGCGAGTTACCCGCTGCGGAGCTACAGTTTTTAGCTAGAGCCAGTGAAAAGCTGG
CGTTATCGCCGCGCTCTTATCATAGAGTGATAAAAGTAGCGCGTACCATTAGTGATTTAAAAGGCGCGCCACAAATTAGT
TTAAATGAGCTTAAAGAAGCGCTTAATTATCGGGCATTTGAGCGTTTATTATCGCAGTTAACCCAATACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.754

100

0.559
  comM Haemophilus influenzae Rd KW20

54.331

100

0.549
  comM Vibrio campbellii strain DS40M4

54.167

100

0.543
  comM Glaesserella parasuis strain SC1401

53.755

100

0.541
  comM Legionella pneumophila str. Paris

50.302

98.807

0.497
  comM Legionella pneumophila strain ERS1305867

50.302

98.807

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.095

100

0.423

Multiple sequence alignment