Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NYE63_RS27335 Genome accession   NZ_CP152053
Coordinates   5592638..5593000 (-) Length   120 a.a.
NCBI ID   WP_342603524.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5587638..5598000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS27320 (NYE63_27315) - 5588478..5590094 (-) 1617 WP_342603521.1 ABC transporter substrate-binding protein -
  NYE63_RS27325 (NYE63_27320) - 5590137..5591105 (-) 969 WP_342603522.1 dipeptide ABC transporter ATP-binding protein -
  NYE63_RS27330 (NYE63_27325) - 5591086..5592090 (-) 1005 WP_342603523.1 ABC transporter ATP-binding protein -
  NYE63_RS27335 (NYE63_27330) ssbB 5592638..5593000 (-) 363 WP_342603524.1 single-stranded DNA-binding protein Machinery gene
  NYE63_RS27340 (NYE63_27335) - 5593359..5593793 (+) 435 WP_342603525.1 YwpF family protein -
  NYE63_RS27345 (NYE63_27340) - 5593910..5594200 (-) 291 WP_342603526.1 hypothetical protein -
  NYE63_RS27350 (NYE63_27345) fabZ 5594511..5594939 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NYE63_RS27355 (NYE63_27350) - 5595067..5595321 (-) 255 WP_342603527.1 DNA-directed RNA polymerase subunit beta -
  NYE63_RS27360 (NYE63_27355) - 5595490..5596332 (-) 843 WP_342603528.1 flagellar hook-basal body protein -
  NYE63_RS27365 (NYE63_27360) - 5596385..5597224 (-) 840 WP_342603529.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13657.59 Da        Isoelectric Point: 9.6262

>NTDB_id=987042 NYE63_RS27335 WP_342603524.1 5592638..5593000(-) (ssbB) [Peribacillus sp. FSL E2-0159]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGSKQTDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=987042 NYE63_RS27335 WP_342603524.1 5592638..5593000(-) (ssbB) [Peribacillus sp. FSL E2-0159]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCCGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
CAATATCACGTTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGTGCCATAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAAGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATTGGGTCTAAACA
AACTGATGTTAAGCCCAAGGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.526

95

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

56.481

90

0.508
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbA Streptococcus mutans UA159

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375
  ssbB Lactococcus lactis subsp. cremoris KW2

41.121

89.167

0.367

Multiple sequence alignment