Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NYE42_RS18145 Genome accession   NZ_CP152036
Coordinates   3692958..3693299 (-) Length   113 a.a.
NCBI ID   WP_227578947.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3687958..3698299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS18130 (NYE42_18110) - 3688226..3691000 (+) 2775 WP_033574409.1 DEAD/DEAH box helicase -
  NYE42_RS18135 (NYE42_18115) - 3691113..3691970 (-) 858 WP_335389928.1 Cof-type HAD-IIB family hydrolase -
  NYE42_RS18140 (NYE42_18120) - 3691967..3692749 (-) 783 WP_039253550.1 DeoR/GlpR family DNA-binding transcription regulator -
  NYE42_RS18145 (NYE42_18125) ssbB 3692958..3693299 (-) 342 WP_227578947.1 single-stranded DNA-binding protein Machinery gene
  NYE42_RS18150 (NYE42_18130) - 3693397..3693750 (-) 354 WP_040238779.1 hypothetical protein -
  NYE42_RS18155 (NYE42_18135) - 3693923..3694333 (+) 411 WP_012118638.1 YwpF-like family protein -
  NYE42_RS18160 (NYE42_18140) mscL 3694379..3694774 (-) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  NYE42_RS18165 (NYE42_18145) fabZ 3694831..3695256 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NYE42_RS18170 (NYE42_18150) - 3695452..3696516 (+) 1065 WP_007407559.1 tetratricopeptide repeat protein -
  NYE42_RS18175 (NYE42_18155) - 3696534..3697355 (-) 822 WP_119001999.1 flagellar hook-basal body protein -
  NYE42_RS18180 (NYE42_18160) - 3697380..3698177 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12541.40 Da        Isoelectric Point: 9.5817

>NTDB_id=986166 NYE42_RS18145 WP_227578947.1 3692958..3693299(-) (ssbB) [Bacillus sp. FSL K6-2865]
MFNHVVLVGRLTKDPELRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTAGVKVYVTEVMADTVRFMDQKQKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=986166 NYE42_RS18145 WP_227578947.1 3692958..3693299(-) (ssbB) [Bacillus sp. FSL K6-2865]
TTGTTTAACCACGTTGTGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
ACATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGCCGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACA
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

75.221

100

0.752
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

93.805

0.549
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363

Multiple sequence alignment