Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MHI39_RS24825 Genome accession   NZ_CP152029
Coordinates   4946574..4946924 (-) Length   116 a.a.
NCBI ID   WP_058005291.1    Uniprot ID   A0A8E2LFB8
Organism   Heyndrickxia sp. FSL K6-6286     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4941574..4951924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS24810 (MHI39_24810) - 4941852..4943417 (+) 1566 WP_342540425.1 SWIM zinc finger family protein -
  MHI39_RS24815 (MHI39_24815) - 4943410..4946202 (+) 2793 WP_058005292.1 DEAD/DEAH box helicase -
  MHI39_RS24820 (MHI39_24820) - 4946398..4946556 (-) 159 WP_342540426.1 hypothetical protein -
  MHI39_RS24825 (MHI39_24825) ssbB 4946574..4946924 (-) 351 WP_058005291.1 single-stranded DNA-binding protein Machinery gene
  MHI39_RS24830 (MHI39_24830) - 4947156..4947590 (+) 435 WP_342540427.1 YwpF-like family protein -
  MHI39_RS24835 (MHI39_24835) - 4947790..4948173 (-) 384 WP_058005289.1 hypothetical protein -
  MHI39_RS24840 (MHI39_24840) - 4948393..4948743 (-) 351 WP_058005288.1 hypothetical protein -
  MHI39_RS24845 (MHI39_24845) fabZ 4949066..4949491 (-) 426 WP_058005287.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MHI39_RS24850 (MHI39_24850) - 4949763..4950035 (-) 273 WP_058005286.1 DNA-directed RNA polymerase subunit beta -
  MHI39_RS24855 (MHI39_24855) - 4950064..4950897 (-) 834 WP_180212337.1 flagellar hook-basal body protein -
  MHI39_RS24860 (MHI39_24860) - 4950925..4951737 (-) 813 WP_058005284.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12977.70 Da        Isoelectric Point: 8.9678

>NTDB_id=985755 MHI39_RS24825 WP_058005291.1 4946574..4946924(-) (ssbB) [Heyndrickxia sp. FSL K6-6286]
MLNQVTLVGRLTKNPELRYTMEGKAVSNVTLALNRQYKNSSGEYDADFVLCTLWNKAAENTVKYCSKGSILGLVGKIQTR
NYENQEGKRVYVTEVVANSVQFLGGKPSEDRELHTS

Nucleotide


Download         Length: 351 bp        

>NTDB_id=985755 MHI39_RS24825 WP_058005291.1 4946574..4946924(-) (ssbB) [Heyndrickxia sp. FSL K6-6286]
TTGTTAAATCAAGTGACATTAGTAGGTAGATTAACAAAAAATCCGGAGCTGCGCTATACAATGGAGGGGAAAGCTGTATC
AAATGTGACACTTGCCTTAAATCGTCAATATAAAAATAGTTCCGGTGAATATGATGCGGATTTTGTCCTTTGTACGCTAT
GGAATAAAGCTGCAGAAAATACAGTTAAATATTGTTCTAAGGGTTCTATTTTAGGACTTGTTGGGAAGATTCAAACTAGA
AACTATGAAAATCAAGAAGGAAAGAGGGTGTATGTAACAGAGGTTGTTGCAAATTCAGTACAATTTCTAGGTGGTAAACC
GTCAGAAGATAGGGAACTGCACACATCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.22

93.966

0.603
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

91.379

0.552
  ssb Latilactobacillus sakei subsp. sakei 23K

52.427

88.793

0.466
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.544

88.793

0.431
  ssbA Streptococcus mutans UA159

46.602

88.793

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

44.66

88.793

0.397
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.66

88.793

0.397
  ssbB/cilA Streptococcus mitis SK321

43.689

88.793

0.388
  ssbB/cilA Streptococcus pneumoniae Rx1

43.689

88.793

0.388
  ssbB/cilA Streptococcus pneumoniae D39

43.689

88.793

0.388
  ssbB/cilA Streptococcus pneumoniae R6

43.689

88.793

0.388
  ssbB Lactococcus lactis subsp. cremoris KW2

41.121

92.241

0.379

Multiple sequence alignment